miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 3' -55 NC_001806.1 + 37969 1.14 0.00169
Target:  5'- cCCAGGGUUGCGAUUGGUUCUGGGGGCa -3'
miRNA:   3'- -GGUCCCAACGCUAACCAAGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 100404 0.76 0.451186
Target:  5'- gCCGGGGUgccCGAUgucggaacggGGUUCaugGGGGGCa -3'
miRNA:   3'- -GGUCCCAac-GCUAa---------CCAAGa--CCCCCG- -5'
5719 3' -55 NC_001806.1 + 34286 0.74 0.537329
Target:  5'- cCCGGGGgcGgGAUggGGUUUagcggcgGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCgCUAa-CCAAGa------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 66553 0.74 0.537329
Target:  5'- gUCGGGGUUuCGGuUUGGggCcGGGGGCg -3'
miRNA:   3'- -GGUCCCAAcGCU-AACCaaGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 29997 0.74 0.58761
Target:  5'- -gGGGGUUGgGGUUGGggUUGGGGu- -3'
miRNA:   3'- ggUCCCAACgCUAACCaaGACCCCcg -5'
5719 3' -55 NC_001806.1 + 39185 0.73 0.597789
Target:  5'- cCCGGGGcgGCGGccUUGucugcGUUCuUGGGGGCc -3'
miRNA:   3'- -GGUCCCaaCGCU--AAC-----CAAG-ACCCCCG- -5'
5719 3' -55 NC_001806.1 + 65449 0.73 0.62845
Target:  5'- gCGGGGgaugccGCGGcccccgGGUcCUGGGGGCg -3'
miRNA:   3'- gGUCCCaa----CGCUaa----CCAaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 133821 0.73 0.62845
Target:  5'- aCCGGGGUgcugGCGGgaguaUGGggCgagGGGGGg -3'
miRNA:   3'- -GGUCCCAa---CGCUa----ACCaaGa--CCCCCg -5'
5719 3' -55 NC_001806.1 + 83258 0.73 0.636639
Target:  5'- gCGGGGggGCGGgcgacggagggGGUUCgGGcGGGCg -3'
miRNA:   3'- gGUCCCaaCGCUaa---------CCAAGaCC-CCCG- -5'
5719 3' -55 NC_001806.1 + 89918 0.72 0.648916
Target:  5'- gCCGGGGUUcaucgGCGAccccgUGGUUacccgGGGGGUu -3'
miRNA:   3'- -GGUCCCAA-----CGCUa----ACCAAga---CCCCCG- -5'
5719 3' -55 NC_001806.1 + 134519 0.72 0.659134
Target:  5'- aCGGGGUgGCG--UGGcUUC-GGGGGCa -3'
miRNA:   3'- gGUCCCAaCGCuaACC-AAGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 24878 0.72 0.689622
Target:  5'- gCGGGGgccGUGGa-GGUgCUGGGGGCg -3'
miRNA:   3'- gGUCCCaa-CGCUaaCCAaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 37 0.72 0.689622
Target:  5'- cCCGGGGggUGUGuuUUGGg---GGGGGCc -3'
miRNA:   3'- -GGUCCCa-ACGCu-AACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 151747 0.72 0.689622
Target:  5'- cCCGGGGggUGUGuuUUGGg---GGGGGCc -3'
miRNA:   3'- -GGUCCCa-ACGCu-AACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 65278 0.71 0.719679
Target:  5'- cCCAGGGUgaaGCGGggaGGaggagGGGGGCc -3'
miRNA:   3'- -GGUCCCAa--CGCUaa-CCaaga-CCCCCG- -5'
5719 3' -55 NC_001806.1 + 95381 0.71 0.72956
Target:  5'- aCgGGGGUUGgGAgcucccgGGggC-GGGGGCg -3'
miRNA:   3'- -GgUCCCAACgCUaa-----CCaaGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 105763 0.7 0.776586
Target:  5'- aCGGGGUcccccaUGgGGaaugguuUUGGUUCgUGGGGGUu -3'
miRNA:   3'- gGUCCCA------ACgCU-------AACCAAG-ACCCCCG- -5'
5719 3' -55 NC_001806.1 + 63966 0.7 0.777517
Target:  5'- gCAGGGUcGCcuuguuugUGGUggcCUGGGGGUu -3'
miRNA:   3'- gGUCCCAaCGcua-----ACCAa--GACCCCCG- -5'
5719 3' -55 NC_001806.1 + 62519 0.69 0.830682
Target:  5'- aCAGGGUcaUG-GAUUGGcuauggUCgacguaGGGGGCg -3'
miRNA:   3'- gGUCCCA--ACgCUAACCa-----AGa-----CCCCCG- -5'
5719 3' -55 NC_001806.1 + 128885 0.69 0.830682
Target:  5'- -gGGGGgcGCGGagucGGgagauccUCUGGGGGCc -3'
miRNA:   3'- ggUCCCaaCGCUaa--CCa------AGACCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.