miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 3' -55 NC_001806.1 + 37 0.72 0.689622
Target:  5'- cCCGGGGggUGUGuuUUGGg---GGGGGCc -3'
miRNA:   3'- -GGUCCCa-ACGCu-AACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 2794 0.68 0.88443
Target:  5'- cCCGGGGcgccGCGGgcUGGgc--GGGGGCg -3'
miRNA:   3'- -GGUCCCaa--CGCUa-ACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 2832 0.68 0.873045
Target:  5'- cCCGGGGgcGUGGaggGGggCgcgggcgcggggagGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCGCUaa-CCaaGa-------------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 6076 0.67 0.897856
Target:  5'- cCCGGGG--GCGGgcccgGGcggCgGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCGCUaa---CCaa-GaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 10387 0.67 0.904224
Target:  5'- cUCGGGGggGCGGggGGaggCgggagccgGGGGGUc -3'
miRNA:   3'- -GGUCCCaaCGCUaaCCaa-Ga-------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 11302 0.68 0.861107
Target:  5'- aCAGGGgagGCGuuggggUGGgugUCgugggguccacgGGGGGCg -3'
miRNA:   3'- gGUCCCaa-CGCua----ACCa--AGa-----------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 14375 0.68 0.88443
Target:  5'- cCCAGGGggcugggGUGAggGGacaCUGGGGcGUg -3'
miRNA:   3'- -GGUCCCaa-----CGCUaaCCaa-GACCCC-CG- -5'
5719 3' -55 NC_001806.1 + 15061 0.68 0.870111
Target:  5'- -gGGGGUgucuucggGCGAcUGG-UCUcGGGGCg -3'
miRNA:   3'- ggUCCCAa-------CGCUaACCaAGAcCCCCG- -5'
5719 3' -55 NC_001806.1 + 16839 0.67 0.897856
Target:  5'- gCuGGGUggUGUGGUgUGGgaaggUUUGGGGGUc -3'
miRNA:   3'- gGuCCCA--ACGCUA-ACCa----AGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 18502 0.66 0.946635
Target:  5'- gCCAGGGcUGgGAgcccucCUGGGGGg -3'
miRNA:   3'- -GGUCCCaACgCUaaccaaGACCCCCg -5'
5719 3' -55 NC_001806.1 + 18936 0.66 0.932518
Target:  5'- aUCAGGuGgcgcagGCGGUUGGcacugCgUGGGGGUc -3'
miRNA:   3'- -GGUCC-Caa----CGCUAACCaa---G-ACCCCCG- -5'
5719 3' -55 NC_001806.1 + 24878 0.72 0.689622
Target:  5'- gCGGGGgccGUGGa-GGUgCUGGGGGCg -3'
miRNA:   3'- gGUCCCaa-CGCUaaCCAaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 28596 0.67 0.897856
Target:  5'- aCCGGGGUcGCcGUg----UUGGGGGCg -3'
miRNA:   3'- -GGUCCCAaCGcUAaccaaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 29997 0.74 0.58761
Target:  5'- -gGGGGUUGgGGUUGGggUUGGGGu- -3'
miRNA:   3'- ggUCCCAACgCUAACCaaGACCCCcg -5'
5719 3' -55 NC_001806.1 + 30386 0.67 0.921915
Target:  5'- gCCGGGcGcgUGCGAcggUGGcgCgcggcucggGGGGGCc -3'
miRNA:   3'- -GGUCC-Ca-ACGCUa--ACCaaGa--------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 31584 0.68 0.854938
Target:  5'- gCGGGGaUGCG--UGGgagUGGGGGUg -3'
miRNA:   3'- gGUCCCaACGCuaACCaagACCCCCG- -5'
5719 3' -55 NC_001806.1 + 32021 0.66 0.942166
Target:  5'- -gGGGGUgggGCGGaggGGUgggGGGGGg -3'
miRNA:   3'- ggUCCCAa--CGCUaa-CCAagaCCCCCg -5'
5719 3' -55 NC_001806.1 + 32823 0.65 0.95087
Target:  5'- aCGGGGgaggaagggaGgGAggagGGUaCUGGGGGUg -3'
miRNA:   3'- gGUCCCaa--------CgCUaa--CCAaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 33993 0.66 0.927336
Target:  5'- gCCGGGGcagggGCGGgggcgUGGgc--GGGGGUg -3'
miRNA:   3'- -GGUCCCaa---CGCUa----ACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 34286 0.74 0.537329
Target:  5'- cCCGGGGgcGgGAUggGGUUUagcggcgGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCgCUAa-CCAAGa------CCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.