miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 5' -56.5 NC_001806.1 + 38004 1.13 0.001707
Target:  5'- gGGGGUCCGACAAACCAUCGGCAGCCCc -3'
miRNA:   3'- -CCCCAGGCUGUUUGGUAGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 21776 0.87 0.089316
Target:  5'- cGGGGUCCGuCGAGCgCGgcgcCGGCAGCCCc -3'
miRNA:   3'- -CCCCAGGCuGUUUG-GUa---GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2764 0.8 0.222006
Target:  5'- cGGGGcgCgGGCGGGCCugcgccgCGGCGGCCCg -3'
miRNA:   3'- -CCCCa-GgCUGUUUGGua-----GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 3349 0.78 0.301299
Target:  5'- cGGGGggCUGGCGGGCCGggcccCGGCcAGCCCc -3'
miRNA:   3'- -CCCCa-GGCUGUUUGGUa----GCCG-UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 5087 0.78 0.308228
Target:  5'- cGGGGUgggCGGCGGcCCGUCGGUggGGCCCg -3'
miRNA:   3'- -CCCCAg--GCUGUUuGGUAGCCG--UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 133215 0.78 0.315277
Target:  5'- cGGGGUgaucgaggacgcCCGGCGGGCCAUCGaGaCGGCCg -3'
miRNA:   3'- -CCCCA------------GGCUGUUUGGUAGC-C-GUCGGg -5'
5719 5' -56.5 NC_001806.1 + 143370 0.77 0.360112
Target:  5'- cGGGGgCCGGCAGACCGaCGGCGacaacGCUCc -3'
miRNA:   3'- -CCCCaGGCUGUUUGGUaGCCGU-----CGGG- -5'
5719 5' -56.5 NC_001806.1 + 20632 0.77 0.360112
Target:  5'- gGGGGUUCGACcaacGGGCCG-CGGCcacgGGCCCc -3'
miRNA:   3'- -CCCCAGGCUG----UUUGGUaGCCG----UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 142253 0.76 0.392383
Target:  5'- cGGGGUCCguccaGACGuuCCGUUGGUAGguCCCa -3'
miRNA:   3'- -CCCCAGG-----CUGUuuGGUAGCCGUC--GGG- -5'
5719 5' -56.5 NC_001806.1 + 142171 0.76 0.400739
Target:  5'- uGGGGUCCGACGuggcGAUgAUgGGCGGCg- -3'
miRNA:   3'- -CCCCAGGCUGU----UUGgUAgCCGUCGgg -5'
5719 5' -56.5 NC_001806.1 + 70649 0.75 0.417788
Target:  5'- gGGGuGUgCGACGAGCU---GGCGGCCCa -3'
miRNA:   3'- -CCC-CAgGCUGUUUGGuagCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 144939 0.75 0.435271
Target:  5'- cGGGGUuaCCGcCAAcgGCCGgcccccgUGGCGGCCCg -3'
miRNA:   3'- -CCCCA--GGCuGUU--UGGUa------GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 33113 0.75 0.45317
Target:  5'- cGGGUCCGGacggggccCGGACCgccgcgGUCGGgGGCCCc -3'
miRNA:   3'- cCCCAGGCU--------GUUUGG------UAGCCgUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 72694 0.75 0.462268
Target:  5'- cGGGcGcCCGACGAugUAUgggCGGUGGCCCu -3'
miRNA:   3'- -CCC-CaGGCUGUUugGUA---GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 47211 0.74 0.480747
Target:  5'- gGGGGUCCcaaAAACacccCGGCGGCCCc -3'
miRNA:   3'- -CCCCAGGcugUUUGgua-GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 138767 0.74 0.480747
Target:  5'- gGGGGUgCCGACGcAGgCGUCGGUaauGGCCg -3'
miRNA:   3'- -CCCCA-GGCUGU-UUgGUAGCCG---UCGGg -5'
5719 5' -56.5 NC_001806.1 + 27298 0.74 0.493893
Target:  5'- cGGGGcCCGGCcAACCAgcguccgccgagucuUCGGggccCGGCCCa -3'
miRNA:   3'- -CCCCaGGCUGuUUGGU---------------AGCC----GUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 11329 0.74 0.499578
Target:  5'- uGGGGUCC-ACGggGGgCGUCGGaAGCCCa -3'
miRNA:   3'- -CCCCAGGcUGU--UUgGUAGCCgUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 96440 0.73 0.518729
Target:  5'- gGGGGUCCuggu-GgCGUCGGCGGCuCCg -3'
miRNA:   3'- -CCCCAGGcuguuUgGUAGCCGUCG-GG- -5'
5719 5' -56.5 NC_001806.1 + 33366 0.73 0.528413
Target:  5'- gGGGGcCCGGaGAGCCG-CGGCAcccggacgcGCCCg -3'
miRNA:   3'- -CCCCaGGCUgUUUGGUaGCCGU---------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.