miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 5' -56.5 NC_001806.1 + 1676 0.66 0.901051
Target:  5'- --aGUCCGGCGcGCCgggcgccauggcGUCGGUGGUCCc -3'
miRNA:   3'- cccCAGGCUGUuUGG------------UAGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2191 0.66 0.913147
Target:  5'- cGGGGgcgCCGGucCAAuuGCCcgCccaGGCGGCCg -3'
miRNA:   3'- -CCCCa--GGCU--GUU--UGGuaG---CCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 2285 0.7 0.698186
Target:  5'- ----cUCGGCGGACCAcucCGGCGGCCCc -3'
miRNA:   3'- ccccaGGCUGUUUGGUa--GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2386 0.69 0.765756
Target:  5'- cGGGGaUCUGGCGcauccaggccGCCAUgCGGCgcagcgGGCCCg -3'
miRNA:   3'- -CCCC-AGGCUGUu---------UGGUA-GCCG------UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2440 0.69 0.756379
Target:  5'- gGGGGcCaaagaGGC-GGCCccCGGCGGCCCc -3'
miRNA:   3'- -CCCCaGg----CUGuUUGGuaGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2530 0.72 0.617876
Target:  5'- cGGGcCCGGCGcACCGcgCGGCgaucgaggccagGGCCCg -3'
miRNA:   3'- cCCCaGGCUGUuUGGUa-GCCG------------UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2613 0.67 0.877022
Target:  5'- gGGuGGUCCGugAGcucgGCCA-CGGCgcgcggggagcaguaGGCCUc -3'
miRNA:   3'- -CC-CCAGGCugUU----UGGUaGCCG---------------UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2725 0.72 0.607804
Target:  5'- gGGGGUCgGG---GCCcUCGGCGGgCCg -3'
miRNA:   3'- -CCCCAGgCUguuUGGuAGCCGUCgGG- -5'
5719 5' -56.5 NC_001806.1 + 2764 0.8 0.222006
Target:  5'- cGGGGcgCgGGCGGGCCugcgccgCGGCGGCCCg -3'
miRNA:   3'- -CCCCa-GgCUGUUUGGua-----GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2874 0.66 0.913147
Target:  5'- cGGGcGUCCGA---GCCGggGGC-GUCCg -3'
miRNA:   3'- -CCC-CAGGCUguuUGGUagCCGuCGGG- -5'
5719 5' -56.5 NC_001806.1 + 2919 0.67 0.874178
Target:  5'- gGGGGUC--GCGGGCCGccgccUCcgGGCGGCCg -3'
miRNA:   3'- -CCCCAGgcUGUUUGGU-----AG--CCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 3149 0.66 0.907817
Target:  5'- aGGGccCCGGC-GACCAggcucacggcgcgcaCGGCGGCCa -3'
miRNA:   3'- cCCCa-GGCUGuUUGGUa--------------GCCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 3349 0.78 0.301299
Target:  5'- cGGGGggCUGGCGGGCCGggcccCGGCcAGCCCc -3'
miRNA:   3'- -CCCCa-GGCUGUUUGGUa----GCCG-UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 3836 0.66 0.907213
Target:  5'- -cGG-CCGGCc-GCCAUgGcGUAGCCCa -3'
miRNA:   3'- ccCCaGGCUGuuUGGUAgC-CGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 4189 0.72 0.59775
Target:  5'- gGGGGcCCGGCGccgGGCCA-CGGCucCCCg -3'
miRNA:   3'- -CCCCaGGCUGU---UUGGUaGCCGucGGG- -5'
5719 5' -56.5 NC_001806.1 + 4601 0.67 0.866923
Target:  5'- cGGaGUCCGACGAggucgaugacGCCGaUGGCcGCCa -3'
miRNA:   3'- cCC-CAGGCUGUU----------UGGUaGCCGuCGGg -5'
5719 5' -56.5 NC_001806.1 + 4666 0.7 0.727643
Target:  5'- uGGG-CCGGCGGGCgCGgcgacaGGCGGUCCg -3'
miRNA:   3'- cCCCaGGCUGUUUG-GUag----CCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 4697 0.7 0.721802
Target:  5'- uGGGGUCCGgauacgcgccgcguaGCGGGgccucCCGUUcGCGGCCCc -3'
miRNA:   3'- -CCCCAGGC---------------UGUUU-----GGUAGcCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 4844 0.73 0.538164
Target:  5'- cGGGGUCgGGCGucggGAUCGUcCGGaCGGCCUc -3'
miRNA:   3'- -CCCCAGgCUGU----UUGGUA-GCC-GUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 5087 0.78 0.308228
Target:  5'- cGGGGUgggCGGCGGcCCGUCGGUggGGCCCg -3'
miRNA:   3'- -CCCCAg--GCUGUUuGGUAGCCG--UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.