miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 3' -45.3 NC_001806.1 + 13254 0.67 0.999966
Target:  5'- ------cGAGCCGCAG-GUAcGUGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCgCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 14326 0.68 0.999854
Target:  5'- -----cAGGACUACGGCGCAca-GCCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGUacgCGG- -5'
5727 3' -45.3 NC_001806.1 + 15509 0.71 0.997262
Target:  5'- --cAAAAAcACCACAGaCGCGgaucggggucuuuuUGUGCCa -3'
miRNA:   3'- cuuUUUUUuUGGUGUC-GCGU--------------ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 19486 0.67 0.999966
Target:  5'- uGAGAGGGGGCgggaAgGGCGCuUGCGCUu -3'
miRNA:   3'- cUUUUUUUUUGg---UgUCGCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 19541 0.68 0.99981
Target:  5'- aGAGcgGGAcGCCGCgcuuuuacacaaGGCGCAaaaGCGCCu -3'
miRNA:   3'- -CUUuuUUUuUGGUG------------UCGCGUa--CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 20864 0.69 0.999494
Target:  5'- cAGAGAcAGACCGuCAGaCGCucgccGCGCCg -3'
miRNA:   3'- cUUUUUuUUUGGU-GUC-GCGua---CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 21786 0.67 0.999916
Target:  5'- -------cGAgCGCGGCGCcgGCaGCCc -3'
miRNA:   3'- cuuuuuuuUUgGUGUCGCGuaCG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 22047 0.67 0.999953
Target:  5'- ---cGGGGAGCCGUGGC-CcgGCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUGUCGcGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 22577 0.76 0.938598
Target:  5'- ---cGGGGAGCCcCGGCGCcgGCGCa -3'
miRNA:   3'- cuuuUUUUUUGGuGUCGCGuaCGCGg -5'
5727 3' -45.3 NC_001806.1 + 23347 0.66 0.999987
Target:  5'- cGAAGacGAAGAAgaGCGGCGCGgaCGCCc -3'
miRNA:   3'- -CUUU--UUUUUUggUGUCGCGUacGCGG- -5'
5727 3' -45.3 NC_001806.1 + 23474 0.74 0.977145
Target:  5'- --------cGCCGCGGCGCAggcccgcccGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGUa--------CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 23710 0.71 0.995646
Target:  5'- -------cGAUCGCcGCGCGgUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCGU-ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24087 0.67 0.999966
Target:  5'- ------uGGGCgCACAGgGCGUGCuGCUg -3'
miRNA:   3'- cuuuuuuUUUG-GUGUCgCGUACG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 24278 0.67 0.999937
Target:  5'- ---------cCCGCcGUGCAgUGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGuCGCGU-ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24302 0.73 0.989246
Target:  5'- -------uGGCCgGCGGCGCGggaccUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGG-UGUCGCGU-----ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24414 0.72 0.991899
Target:  5'- --------cGCCGCuGCGCcUGUGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGuCGCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24449 0.68 0.99981
Target:  5'- --------uACCGCGuGCGCAcGCGCUu -3'
miRNA:   3'- cuuuuuuuuUGGUGU-CGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24565 0.7 0.998796
Target:  5'- --------cGCCAUGGCGCccggcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGua---CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24595 0.67 0.999937
Target:  5'- cGAGGAGGAGGCCcacucGCAcGcCGCcUGCGCg -3'
miRNA:   3'- -CUUUUUUUUUGG-----UGU-C-GCGuACGCGg -5'
5727 3' -45.3 NC_001806.1 + 24632 0.69 0.999494
Target:  5'- -----uGGGGCCugGGCGCGccgcUGCgGCCc -3'
miRNA:   3'- cuuuuuUUUUGGugUCGCGU----ACG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.