miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 21951 0.74 0.098359
Target:  5'- cGGGCCCUucacGGCCGGGcaGCCCCggcGGGu -3'
miRNA:   3'- cCCCGGGGc---CCGGCCC--CGGGGaa-CCC- -5'
5727 5' -69.9 NC_001806.1 + 9336 0.74 0.098359
Target:  5'- uGGGGCCUCGGGauGGGGCgCCUUa-- -3'
miRNA:   3'- -CCCCGGGGCCCggCCCCGgGGAAccc -5'
5727 5' -69.9 NC_001806.1 + 27829 0.74 0.102917
Target:  5'- gGGGGCgCCGGGUugguccccggggaCGGGGCCgCCccgcggUGGGc -3'
miRNA:   3'- -CCCCGgGGCCCG-------------GCCCCGG-GGa-----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 92931 0.74 0.103162
Target:  5'- cGGGCCUgGaGGCCGGGGCCCgCgcgcugaUGGa -3'
miRNA:   3'- cCCCGGGgC-CCGGCCCCGGG-Ga------ACCc -5'
5727 5' -69.9 NC_001806.1 + 93595 0.74 0.103162
Target:  5'- gGGGGCCCCGGGaCCGGcauuugccGGCCgCaaacGGGc -3'
miRNA:   3'- -CCCCGGGGCCC-GGCC--------CCGGgGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 95432 0.74 0.105645
Target:  5'- cGGGCCCgggGGGCaGGGGCCCgagacgUGGGg -3'
miRNA:   3'- cCCCGGGg--CCCGgCCCCGGGga----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 151263 0.73 0.111837
Target:  5'- cGGGCCCacgccgggcgguggGGGCCGGGGCCgg--GGGg -3'
miRNA:   3'- cCCCGGGg-------------CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 3124 0.73 0.116151
Target:  5'- cGGGUCCCGcGGCagcgCGGGGCCCa--GGGc -3'
miRNA:   3'- cCCCGGGGC-CCG----GCCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 9773 0.73 0.116151
Target:  5'- gGGGGCgCgUGGGgaGGGGCCCCgacgugcgggUGGGu -3'
miRNA:   3'- -CCCCG-GgGCCCggCCCCGGGGa---------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 22175 0.73 0.116151
Target:  5'- cGGGcGCCCCGgcGGCCGuguGGGCgCCCgagcUGGGc -3'
miRNA:   3'- -CCC-CGGGGC--CCGGC---CCCG-GGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 128886 0.73 0.117254
Target:  5'- gGGGGCgcggagucgggagauCCUcuggGGGCCGGGcGUCCCaUUGGGg -3'
miRNA:   3'- -CCCCG---------------GGG----CCCGGCCC-CGGGG-AACCC- -5'
5727 5' -69.9 NC_001806.1 + 33123 0.73 0.118646
Target:  5'- cGGGGCCcggaccgCCGcGGUCgGGGGCCCCUcgucccGGGc -3'
miRNA:   3'- -CCCCGG-------GGC-CCGG-CCCCGGGGAa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 7399 0.73 0.118926
Target:  5'- aGGGaGCCCCGGucuccCCGGGaGCCCCggucuccccGGGa -3'
miRNA:   3'- -CCC-CGGGGCCc----GGCCC-CGGGGaa-------CCC- -5'
5727 5' -69.9 NC_001806.1 + 19102 0.73 0.118926
Target:  5'- uGGGGCCgaCgGGGUgGGGGCCCg--GGGc -3'
miRNA:   3'- -CCCCGG--GgCCCGgCCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 51392 0.73 0.121763
Target:  5'- aGGGGCUCCuuagcgcGGCCGuGGGCgCCUUGcGGc -3'
miRNA:   3'- -CCCCGGGGc------CCGGC-CCCGgGGAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 55711 0.73 0.124369
Target:  5'- gGGGGUgaccUCCGGGCUggcggcugacccgGGGGaCCCCgaugUGGGg -3'
miRNA:   3'- -CCCCG----GGGCCCGG-------------CCCC-GGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 106694 0.73 0.124662
Target:  5'- gGGGGCucuuCCCGGGCCcccgGGcGGCCCCcgguaucGGGu -3'
miRNA:   3'- -CCCCG----GGGCCCGG----CC-CCGGGGaa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 2440 0.72 0.127625
Target:  5'- gGGGGCCaaagaggCGGcccCCGGcGGCCCCgUGGGg -3'
miRNA:   3'- -CCCCGGg------GCCc--GGCC-CCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 25572 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 25604 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.