miRNA display CGI


Results 41 - 60 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 132688 0.67 0.298866
Target:  5'- gGGGGCcuggCCCGcGGUgGGGGCCa---GGGu -3'
miRNA:   3'- -CCCCG----GGGC-CCGgCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 109233 0.67 0.298241
Target:  5'- uGGGGCCgggCGGGgCGgaauccuGGGCCCCgggcaccaGGGa -3'
miRNA:   3'- -CCCCGGg--GCCCgGC-------CCCGGGGaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 20310 0.67 0.29637
Target:  5'- uGGGGCggucccgCCCGccGGCCaaugggGGGGCggcaaggcgggcggCCCUUGGGc -3'
miRNA:   3'- -CCCCG-------GGGC--CCGG------CCCCG--------------GGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 56263 0.67 0.292656
Target:  5'- cGGGCCCCGuccCCGGGGUCCUUc--- -3'
miRNA:   3'- cCCCGGGGCcc-GGCCCCGGGGAaccc -5'
5727 5' -69.9 NC_001806.1 + 20625 0.67 0.292656
Target:  5'- cGGGGCCggggguucgaccaaCGGGCCGcggccacGGGCCCCcggcgugccggcgucGGGg -3'
miRNA:   3'- -CCCCGGg-------------GCCCGGC-------CCCGGGGaa-------------CCC- -5'
5727 5' -69.9 NC_001806.1 + 22893 0.67 0.288979
Target:  5'- cGGGGCCCggcccgccagcccccCGcGGCCGGaGGgaCCCgcGGGc -3'
miRNA:   3'- -CCCCGGG---------------GC-CCGGCC-CCg-GGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 68395 0.67 0.286547
Target:  5'- cGGGCCCaCGGGCuucCGGagacGGCgCUCUUGGc -3'
miRNA:   3'- cCCCGGG-GCCCG---GCC----CCG-GGGAACCc -5'
5727 5' -69.9 NC_001806.1 + 70515 0.67 0.286547
Target:  5'- uGGGGCCCUGGccccCCGaGGCCa--UGGGg -3'
miRNA:   3'- -CCCCGGGGCCc---GGCcCCGGggaACCC- -5'
5727 5' -69.9 NC_001806.1 + 46091 0.67 0.285942
Target:  5'- cGGGGCgguuuugUCCGGcCCGGGGCCUgCgcGGGc -3'
miRNA:   3'- -CCCCG-------GGGCCcGGCCCCGGG-GaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 57655 0.67 0.284132
Target:  5'- gGGGGCCCCcccGGaaggcggagaaggcGCCGGGGCUugcuucuCCggucGGGa -3'
miRNA:   3'- -CCCCGGGG---CC--------------CGGCCCCGG-------GGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 66821 0.67 0.280539
Target:  5'- cGGGGCCggcCCGgguGGCCGGugugcGCCgCCUccUGGGg -3'
miRNA:   3'- -CCCCGG---GGC---CCGGCCc----CGG-GGA--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 23527 0.67 0.280539
Target:  5'- aGGGCCCCGacccccugggcGGCUGGcGGCggcagCCCccGGGg -3'
miRNA:   3'- cCCCGGGGC-----------CCGGCC-CCG-----GGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 65303 0.67 0.280539
Target:  5'- gGGGGCCCCcaaGGGCCucGGuggggacgucGGCCgUcUGGGu -3'
miRNA:   3'- -CCCCGGGG---CCCGG--CC----------CCGGgGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 102345 0.67 0.280539
Target:  5'- gGGGGacgucCCCCGGggccGCCGGGaGCaCCCcgUGGu -3'
miRNA:   3'- -CCCC-----GGGGCC----CGGCCC-CG-GGGa-ACCc -5'
5727 5' -69.9 NC_001806.1 + 135072 0.68 0.268825
Target:  5'- cGGGGaCgCgCCGGGCCGGaaaucGGCgCCgaccgGGGa -3'
miRNA:   3'- -CCCC-G-G-GGCCCGGCC-----CCGgGGaa---CCC- -5'
5727 5' -69.9 NC_001806.1 + 24802 0.68 0.263117
Target:  5'- gGGGGCCCUGccGCCGGcGCCgCCc-GGGa -3'
miRNA:   3'- -CCCCGGGGCc-CGGCCcCGG-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 119601 0.68 0.263117
Target:  5'- uGGaGCCCCccGGCgGGGGCCgCUUUGuGGc -3'
miRNA:   3'- cCC-CGGGGc-CCGgCCCCGG-GGAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 23461 0.68 0.254189
Target:  5'- cGGcGCCCCGGGCCGccgcGGcgcaggcccgcccgcGCCCCgUGGc -3'
miRNA:   3'- cCC-CGGGGCCCGGC----CC---------------CGGGGaACCc -5'
5727 5' -69.9 NC_001806.1 + 25941 0.68 0.251997
Target:  5'- cGGGCgUgGGGgCGGGGCCgCgggagcgGGGg -3'
miRNA:   3'- cCCCGgGgCCCgGCCCCGGgGaa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 79250 0.68 0.251451
Target:  5'- -cGGCCCUguggaccuuguugGGGCgGaGGGCUCgUUGGGg -3'
miRNA:   3'- ccCCGGGG-------------CCCGgC-CCCGGGgAACCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.