miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 44690 0.66 0.34102
Target:  5'- uGGGGCCCCGaGcGCCcccuccaaccaaGGaucuucgcguaucccGGCCCCgguuggagGGGg -3'
miRNA:   3'- -CCCCGGGGC-C-CGG------------CC---------------CCGGGGaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 127536 0.66 0.33212
Target:  5'- cGGGGUCCucggCGGGCuCGGGGucguacCCCCcaacggugucauagaUGGGa -3'
miRNA:   3'- -CCCCGGG----GCCCG-GCCCC------GGGGa--------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 56621 0.66 0.344488
Target:  5'- cGGGCCgcgcgacccuggCCGGugcgaccucaucgGCCGGcGGCCCg-UGGGa -3'
miRNA:   3'- cCCCGG------------GGCC-------------CGGCC-CCGGGgaACCC- -5'
5727 5' -69.9 NC_001806.1 + 12910 0.66 0.324724
Target:  5'- cGGGGUCCUccaagaGGGCCgaauccucGGGGUCUUccGGGg -3'
miRNA:   3'- -CCCCGGGG------CCCGG--------CCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 143117 0.66 0.359332
Target:  5'- gGGGGCguggcugCCGGGa-GGGGCCgCggaUGGGc -3'
miRNA:   3'- -CCCCGg------GGCCCggCCCCGGgGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 23795 0.66 0.324724
Target:  5'- cGGGGCCgCCggGGGCCGccucuuuGGCCCCcUGc- -3'
miRNA:   3'- -CCCCGG-GG--CCCGGCc------CCGGGGaACcc -5'
5727 5' -69.9 NC_001806.1 + 30035 0.66 0.352209
Target:  5'- cGGGGCggCCgagGGGCCGgacGGGCcCCCUUGu- -3'
miRNA:   3'- -CCCCG--GGg--CCCGGC---CCCG-GGGAACcc -5'
5727 5' -69.9 NC_001806.1 + 31098 0.66 0.359332
Target:  5'- -cGGCUgCGGGCCGcGGuCCCCggcUGGa -3'
miRNA:   3'- ccCCGGgGCCCGGCcCC-GGGGa--ACCc -5'
5727 5' -69.9 NC_001806.1 + 4821 0.66 0.345185
Target:  5'- gGGGGUCCgGGGCgGcGaGGCCgCg-GGGu -3'
miRNA:   3'- -CCCCGGGgCCCGgC-C-CCGGgGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 67498 0.66 0.331443
Target:  5'- cGGGGUCCCGaccccCUGGGGagCCCU-GGGc -3'
miRNA:   3'- -CCCCGGGGCcc---GGCCCCg-GGGAaCCC- -5'
5727 5' -69.9 NC_001806.1 + 34280 0.66 0.359332
Target:  5'- uGGGGUCCCGGGggcgggaUGGGGUUUagcggcgGGGg -3'
miRNA:   3'- -CCCCGGGGCCCg------GCCCCGGGgaa----CCC- -5'
5727 5' -69.9 NC_001806.1 + 98694 0.66 0.338263
Target:  5'- uGGGGCgCUGG-CCGuGGGUCUgUUGGu -3'
miRNA:   3'- -CCCCGgGGCCcGGC-CCCGGGgAACCc -5'
5727 5' -69.9 NC_001806.1 + 55542 0.66 0.351502
Target:  5'- uGGGGCggCCCGacuuGGCgGGGGUgguguugUUCUUGGGu -3'
miRNA:   3'- -CCCCG--GGGC----CCGgCCCCG-------GGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 93889 0.66 0.345185
Target:  5'- cGGGCCCgCGGGa-GGccGCCCCgaagagGGGg -3'
miRNA:   3'- cCCCGGG-GCCCggCCc-CGGGGaa----CCC- -5'
5727 5' -69.9 NC_001806.1 + 15847 0.66 0.345185
Target:  5'- cGGGCCCCuu-UUGGGGCCgCggGGGg -3'
miRNA:   3'- cCCCGGGGcccGGCCCCGGgGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 96516 0.66 0.367284
Target:  5'- gGGGGCCCugccacucCGGcGCCGcccGCCCCUggcgcccccccaacgGGGg -3'
miRNA:   3'- -CCCCGGG--------GCC-CGGCcc-CGGGGAa--------------CCC- -5'
5727 5' -69.9 NC_001806.1 + 22578 0.66 0.324724
Target:  5'- gGGGaGCCCCGGcGCCGGcGCagaugaCgaGGGg -3'
miRNA:   3'- -CCC-CGGGGCC-CGGCCcCGgg----GaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 86038 0.66 0.324724
Target:  5'- aGGGCCgCGGGgggggCGGGcucGUCCCcUGGGg -3'
miRNA:   3'- cCCCGGgGCCCg----GCCC---CGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 13604 0.66 0.352209
Target:  5'- gGGGGCUggaaCGGGuCCGGuaGGCCCgCcUGGa -3'
miRNA:   3'- -CCCCGGg---GCCC-GGCC--CCGGG-GaACCc -5'
5727 5' -69.9 NC_001806.1 + 113158 0.66 0.352209
Target:  5'- -uGGCCCaCGGGC--GGGUCCgaUGGGu -3'
miRNA:   3'- ccCCGGG-GCCCGgcCCCGGGgaACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.