miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 2440 0.72 0.127625
Target:  5'- gGGGGCCaaagaggCGGcccCCGGcGGCCCCgUGGGg -3'
miRNA:   3'- -CCCCGGg------GCCc--GGCC-CCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 2700 0.71 0.155199
Target:  5'- gGGGGCugccgccgccagccgCCCaggGGGUCGGGGCCCUcgGcGGg -3'
miRNA:   3'- -CCCCG---------------GGG---CCCGGCCCCGGGGaaC-CC- -5'
5727 5' -69.9 NC_001806.1 + 2796 0.77 0.064344
Target:  5'- cGGGGCgCCgCGGGCUGggcgggggcgggcucGGGCCCCggGGGc -3'
miRNA:   3'- -CCCCG-GG-GCCCGGC---------------CCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 2942 0.71 0.156277
Target:  5'- gGGcGGCCgggCCGGGCCGGGacucuugcgcuugcGCCCCUcccgcggcgcgGGGa -3'
miRNA:   3'- -CC-CCGG---GGCCCGGCCC--------------CGGGGAa----------CCC- -5'
5727 5' -69.9 NC_001806.1 + 3124 0.73 0.116151
Target:  5'- cGGGUCCCGcGGCagcgCGGGGCCCa--GGGc -3'
miRNA:   3'- cCCCGGGGC-CCG----GCCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 3351 0.72 0.143441
Target:  5'- gGGGGCUggCGGGCCGGGccccggccaGCCCC--GGGa -3'
miRNA:   3'- -CCCCGGg-GCCCGGCCC---------CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 4061 0.69 0.21135
Target:  5'- cGGGcGCCCacaCGGccGCCGGGGCgCCCgaGGc -3'
miRNA:   3'- -CCC-CGGG---GCC--CGGCCCCG-GGGaaCCc -5'
5727 5' -69.9 NC_001806.1 + 4177 0.67 0.318106
Target:  5'- --cGCCCCggGGGCgGGGGCCCggcgccGGGc -3'
miRNA:   3'- cccCGGGG--CCCGgCCCCGGGgaa---CCC- -5'
5727 5' -69.9 NC_001806.1 + 4426 0.75 0.079249
Target:  5'- gGGGGUggCCCGGGCgGGGGCggcguccgCCCggGGGc -3'
miRNA:   3'- -CCCCG--GGGCCCGgCCCCG--------GGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 4738 0.82 0.026934
Target:  5'- -cGGCCCCGGGCCGGGGCCCg----- -3'
miRNA:   3'- ccCCGGGGCCCGGCCCCGGGgaaccc -5'
5727 5' -69.9 NC_001806.1 + 4821 0.66 0.345185
Target:  5'- gGGGGUCCgGGGCgGcGaGGCCgCg-GGGu -3'
miRNA:   3'- -CCCCGGGgCCCGgC-C-CCGGgGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 5110 0.71 0.168593
Target:  5'- uGGGGCCCgGGgaGCCGGGGCgCUgCUUGu- -3'
miRNA:   3'- -CCCCGGGgCC--CGGCCCCG-GG-GAACcc -5'
5727 5' -69.9 NC_001806.1 + 5598 0.77 0.063721
Target:  5'- cGGGGgCCCGuGGCCGcGGCCCgUUGGu -3'
miRNA:   3'- -CCCCgGGGC-CCGGCcCCGGGgAACCc -5'
5727 5' -69.9 NC_001806.1 + 5944 0.69 0.236046
Target:  5'- cGGGaccGCCCCaagGGGgCGGGGCCgCC--GGGu -3'
miRNA:   3'- -CCC---CGGGG---CCCgGCCCCGG-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 6072 0.66 0.366556
Target:  5'- -cGGCCCCGGGggcGGGCCCgggcggcgGGGg -3'
miRNA:   3'- ccCCGGGGCCCggcCCCGGGgaa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 7399 0.73 0.118926
Target:  5'- aGGGaGCCCCGGucuccCCGGGaGCCCCggucuccccGGGa -3'
miRNA:   3'- -CCC-CGGGGCCc----GGCCC-CGGGGaa-------CCC- -5'
5727 5' -69.9 NC_001806.1 + 9336 0.74 0.098359
Target:  5'- uGGGGCCUCGGGauGGGGCgCCUUa-- -3'
miRNA:   3'- -CCCCGGGGCCCggCCCCGgGGAAccc -5'
5727 5' -69.9 NC_001806.1 + 9773 0.73 0.116151
Target:  5'- gGGGGCgCgUGGGgaGGGGCCCCgacgugcgggUGGGu -3'
miRNA:   3'- -CCCCG-GgGCCCggCCCCGGGGa---------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 12910 0.66 0.324724
Target:  5'- cGGGGUCCUccaagaGGGCCgaauccucGGGGUCUUccGGGg -3'
miRNA:   3'- -CCCCGGGG------CCCGG--------CCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 13604 0.66 0.352209
Target:  5'- gGGGGCUggaaCGGGuCCGGuaGGCCCgCcUGGa -3'
miRNA:   3'- -CCCCGGg---GCCC-GGCC--CCGGG-GaACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.