miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5728 3' -67.7 NC_001806.1 + 5032 0.69 0.256261
Target:  5'- cCUCCUCCGU-CUCCgCgCCCCaCCCgaGGGCc -3'
miRNA:   3'- -GAGGGGGCGuGAGG-G-GGGG-GGG--UCCG- -5'
5728 3' -67.7 NC_001806.1 + 5517 0.66 0.382692
Target:  5'- -gCCgCCG-GCcCCCCgCCCCCCcGGCg -3'
miRNA:   3'- gaGGgGGCgUGaGGGG-GGGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 5823 0.69 0.250654
Target:  5'- --gCCCCGCGCgCCCguuggCCgUCCCCGGGCc -3'
miRNA:   3'- gagGGGGCGUGaGGG-----GG-GGGGGUCCG- -5'
5728 3' -67.7 NC_001806.1 + 5908 0.68 0.292071
Target:  5'- -gCCgCCCGC-CUugCCgCCCCCCCAuuGGCc -3'
miRNA:   3'- gaGG-GGGCGuGA--GGgGGGGGGGU--CCG- -5'
5728 3' -67.7 NC_001806.1 + 6824 0.66 0.406097
Target:  5'- gUCCCCUGC--UgCgCUCUCCCGGGCu -3'
miRNA:   3'- gAGGGGGCGugAgGgGGGGGGGUCCG- -5'
5728 3' -67.7 NC_001806.1 + 7404 0.69 0.261969
Target:  5'- --gCCCCGguCUCCCCgggagccccgguCUCCCCGGGa -3'
miRNA:   3'- gagGGGGCguGAGGGG------------GGGGGGUCCg -5'
5728 3' -67.7 NC_001806.1 + 8392 0.67 0.352912
Target:  5'- aCUCCCCacccaccCACUCCCCaCCCaCCCAc-- -3'
miRNA:   3'- -GAGGGGgc-----GUGAGGGG-GGG-GGGUccg -5'
5728 3' -67.7 NC_001806.1 + 8422 0.67 0.352912
Target:  5'- aCUCCCCacccaccCACUCCCCaCCCaCCCAc-- -3'
miRNA:   3'- -GAGGGGgc-----GUGAGGGG-GGG-GGGUccg -5'
5728 3' -67.7 NC_001806.1 + 8452 0.67 0.352912
Target:  5'- aCUCCCCacccaccCACUCCCCaCCCaCCCAc-- -3'
miRNA:   3'- -GAGGGGgc-----GUGAGGGG-GGG-GGGUccg -5'
5728 3' -67.7 NC_001806.1 + 8512 0.67 0.331677
Target:  5'- aCUCCCCacccaccCACUCCCCaCCCaCCCAa-- -3'
miRNA:   3'- -GAGGGGgc-----GUGAGGGG-GGG-GGGUccg -5'
5728 3' -67.7 NC_001806.1 + 12524 0.68 0.304199
Target:  5'- gUCCCCCGCuaccgacuuaucgACuguccaccuuUCCCCCCUUCCAGa- -3'
miRNA:   3'- gAGGGGGCG-------------UG----------AGGGGGGGGGGUCcg -5'
5728 3' -67.7 NC_001806.1 + 12604 0.67 0.370582
Target:  5'- --aCCCCGCAgaCCUgaCCCCCCCgcacccauuaaggggGGGUa -3'
miRNA:   3'- gagGGGGCGUgaGGG--GGGGGGG---------------UCCG- -5'
5728 3' -67.7 NC_001806.1 + 13959 0.67 0.367595
Target:  5'- cCUCCuCCuCGUAaauggCCCCUCCCCCuuGGGg -3'
miRNA:   3'- -GAGG-GG-GCGUga---GGGGGGGGGG--UCCg -5'
5728 3' -67.7 NC_001806.1 + 14103 0.7 0.234441
Target:  5'- -cCCUCCGCAUUgCCCCCCcauCCCCcuGCc -3'
miRNA:   3'- gaGGGGGCGUGA-GGGGGG---GGGGucCG- -5'
5728 3' -67.7 NC_001806.1 + 17118 0.76 0.082437
Target:  5'- -cCCCCCGUAaaucaccCUCCCCUCCCCCGGacGCc -3'
miRNA:   3'- gaGGGGGCGU-------GAGGGGGGGGGGUC--CG- -5'
5728 3' -67.7 NC_001806.1 + 17150 0.71 0.191032
Target:  5'- -nCCUCCGCugccggucGCUCCaagggCCCCCCCGGGa -3'
miRNA:   3'- gaGGGGGCG--------UGAGGg----GGGGGGGUCCg -5'
5728 3' -67.7 NC_001806.1 + 17853 0.68 0.292071
Target:  5'- gUUCCCCGCGg-CCCCCaaccaCCCCCuGGa -3'
miRNA:   3'- gAGGGGGCGUgaGGGGG-----GGGGGuCCg -5'
5728 3' -67.7 NC_001806.1 + 19741 0.74 0.1191
Target:  5'- -gCCCCCGCG-UCCCCCCUCCUccGCc -3'
miRNA:   3'- gaGGGGGCGUgAGGGGGGGGGGucCG- -5'
5728 3' -67.7 NC_001806.1 + 19763 0.69 0.250654
Target:  5'- -nCCCCCGCG-UCCCCCCUCCUc--- -3'
miRNA:   3'- gaGGGGGCGUgAGGGGGGGGGGuccg -5'
5728 3' -67.7 NC_001806.1 + 19785 0.74 0.1191
Target:  5'- -gCCCCCGCG-UCCCCCCUCCUccGCc -3'
miRNA:   3'- gaGGGGGCGUgAGGGGGGGGGGucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.