miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5728 3' -67.7 NC_001806.1 + 85 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 109 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 133 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 157 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 181 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 205 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 229 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 253 0.75 0.10553
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCg---- -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGGguccg -5'
5728 3' -67.7 NC_001806.1 + 277 0.78 0.059894
Target:  5'- cCUCCCCC-CGCUCCUCCCCCCgCucccgcGGCc -3'
miRNA:   3'- -GAGGGGGcGUGAGGGGGGGGG-Gu-----CCG- -5'
5728 3' -67.7 NC_001806.1 + 539 0.67 0.331677
Target:  5'- -aCCUCC-CGCUCCUCCagacguaCCCCGGcGCa -3'
miRNA:   3'- gaGGGGGcGUGAGGGGGg------GGGGUC-CG- -5'
5728 3' -67.7 NC_001806.1 + 601 0.67 0.33865
Target:  5'- cCUCCCCagccccaGCcCUCCCcagccccagCCCUCCCcGGCc -3'
miRNA:   3'- -GAGGGGg------CGuGAGGG---------GGGGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 649 0.67 0.345728
Target:  5'- cCUCCCCgGCcccagccCUCCCcggccccagCCCUCCCcGGCc -3'
miRNA:   3'- -GAGGGGgCGu------GAGGG---------GGGGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 697 0.67 0.367595
Target:  5'- cCUCCCCgGC-C-CCagCCCUCCCC-GGCc -3'
miRNA:   3'- -GAGGGGgCGuGaGG--GGGGGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 729 0.73 0.137524
Target:  5'- cCUCCCCgGCGCgUCCCgcgCUCCCUCGGGg -3'
miRNA:   3'- -GAGGGGgCGUG-AGGG---GGGGGGGUCCg -5'
5728 3' -67.7 NC_001806.1 + 994 0.68 0.311396
Target:  5'- -gCCCCCGCcC-CCUCCCgCCCCucGCc -3'
miRNA:   3'- gaGGGGGCGuGaGGGGGG-GGGGucCG- -5'
5728 3' -67.7 NC_001806.1 + 1539 0.66 0.414097
Target:  5'- gUCCCuCCGCGg-CCCgCgCCaCCGGGCc -3'
miRNA:   3'- gAGGG-GGCGUgaGGGgGgGG-GGUCCG- -5'
5728 3' -67.7 NC_001806.1 + 2275 0.7 0.224128
Target:  5'- -gCCCgCCGCgcucggcggaccACUCCggcggCCCCCCCgAGGCc -3'
miRNA:   3'- gaGGG-GGCG------------UGAGG-----GGGGGGGgUCCG- -5'
5728 3' -67.7 NC_001806.1 + 2963 0.67 0.367595
Target:  5'- -aCUCuuGCGCUugCgCCCCUCCCGcGGCg -3'
miRNA:   3'- gaGGGggCGUGA--GgGGGGGGGGU-CCG- -5'
5728 3' -67.7 NC_001806.1 + 4112 0.76 0.086802
Target:  5'- cCUCCUCCGCcucggGCgCCCCCCagaggCCCGGGCg -3'
miRNA:   3'- -GAGGGGGCG-----UGaGGGGGGg----GGGUCCG- -5'
5728 3' -67.7 NC_001806.1 + 4950 0.71 0.195483
Target:  5'- -gCCCgCCGCGggggccCUCCCgUCCCgCCGGGCg -3'
miRNA:   3'- gaGGG-GGCGU------GAGGGgGGGG-GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.