Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5728 | 3' | -67.7 | NC_001806.1 | + | 21135 | 0.66 | 0.398196 |
Target: 5'- --gCCCCG-GCUCCCCgggCCCCaccgaCGGGCc -3' miRNA: 3'- gagGGGGCgUGAGGGG---GGGGg----GUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 81932 | 0.66 | 0.406097 |
Target: 5'- cCUCggCCCCGUACgCCUCCCgggaCCgCCGGGUu -3' miRNA: 3'- -GAG--GGGGCGUGaGGGGGG----GG-GGUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 67133 | 0.66 | 0.430382 |
Target: 5'- ---aCCCGCucucgGCUCgCCCCgaCCCCAGGg -3' miRNA: 3'- gaggGGGCG-----UGAG-GGGGg-GGGGUCCg -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 65647 | 0.66 | 0.390394 |
Target: 5'- -gCCCCgGCGg--CCUCCCCCUGGGUg -3' miRNA: 3'- gaGGGGgCGUgagGGGGGGGGGUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 26852 | 0.66 | 0.398196 |
Target: 5'- -cCCCCCGCGa-CCCCCgcgaCCCCC--GCg -3' miRNA: 3'- gaGGGGGCGUgaGGGGG----GGGGGucCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 46065 | 0.66 | 0.398196 |
Target: 5'- gUCCCCCGgACgcggcgUCCCgUUUCCgGGGCg -3' miRNA: 3'- gAGGGGGCgUG------AGGGgGGGGGgUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 81459 | 0.66 | 0.382692 |
Target: 5'- -aCUCCCGCACggCCCCUUgggugCCCUGGGg -3' miRNA: 3'- gaGGGGGCGUGa-GGGGGG-----GGGGUCCg -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 150203 | 0.66 | 0.395845 |
Target: 5'- gUCCCCCaaagaaccccauuaGCAUgCCCCUCCCgCCgacgcaacagGGGCu -3' miRNA: 3'- gAGGGGG--------------CGUGaGGGGGGGG-GG----------UCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 79642 | 0.66 | 0.413293 |
Target: 5'- cCUCCuCCCGCGCUUCUgCCgCUucuucguCCGGGUc -3' miRNA: 3'- -GAGG-GGGCGUGAGGGgGG-GG-------GGUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 28806 | 0.66 | 0.382692 |
Target: 5'- -aCCCCUuu-CUCCCCCCUcuuCCgAGGCc -3' miRNA: 3'- gaGGGGGcguGAGGGGGGG---GGgUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 101569 | 0.66 | 0.406097 |
Target: 5'- uCUCCCUaaUGC-C-CCCUCCCCCCucGCc -3' miRNA: 3'- -GAGGGG--GCGuGaGGGGGGGGGGucCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 144120 | 0.66 | 0.398196 |
Target: 5'- -cCCCCUGC-CUUCCaCCCUCC-GGCc -3' miRNA: 3'- gaGGGGGCGuGAGGGgGGGGGGuCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 115007 | 0.66 | 0.382692 |
Target: 5'- -aCCUgggCCGCgggGCUCCCCCUCUCCuGGa -3' miRNA: 3'- gaGGG---GGCG---UGAGGGGGGGGGGuCCg -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 6824 | 0.66 | 0.406097 |
Target: 5'- gUCCCCUGC--UgCgCUCUCCCGGGCu -3' miRNA: 3'- gAGGGGGCGugAgGgGGGGGGGUCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 145922 | 0.66 | 0.395845 |
Target: 5'- uCUCCCCCcccccCACcccuccgCCCCaCCCCCCAacacccacgucuguGGUg -3' miRNA: 3'- -GAGGGGGc----GUGa------GGGG-GGGGGGU--------------CCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 55259 | 0.66 | 0.414097 |
Target: 5'- -gCgCCCGgGCcggCCCCCuCCgCCCAGaGCa -3' miRNA: 3'- gaGgGGGCgUGa--GGGGG-GG-GGGUC-CG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 47226 | 0.66 | 0.382692 |
Target: 5'- -aCCCCgGCGg-CCCCCCCgCUguacgcaacgGGGCg -3' miRNA: 3'- gaGGGGgCGUgaGGGGGGGgGG----------UCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 96520 | 0.66 | 0.381928 |
Target: 5'- --gCCCUGcCACUCCggcgccgCCCgCCCCuGGCg -3' miRNA: 3'- gagGGGGC-GUGAGG-------GGGgGGGGuCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 5517 | 0.66 | 0.382692 |
Target: 5'- -gCCgCCG-GCcCCCCgCCCCCCcGGCg -3' miRNA: 3'- gaGGgGGCgUGaGGGG-GGGGGGuCCG- -5' |
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5728 | 3' | -67.7 | NC_001806.1 | + | 131546 | 0.66 | 0.398196 |
Target: 5'- -aCCCCaaaaACcgCCCCCCCCCCGucaccGGUu -3' miRNA: 3'- gaGGGGgcg-UGa-GGGGGGGGGGU-----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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