miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 5' -63.9 NC_001806.1 + 29942 1.08 0.000752
Target:  5'- gCGGCUCCCGCCAGUCGCGAGCCGCGGc -3'
miRNA:   3'- -GCCGAGGGCGGUCAGCGCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 24693 0.79 0.096525
Target:  5'- cCGGC-CCgGcCCGGUggCGCGGGCCGCGGa -3'
miRNA:   3'- -GCCGaGGgC-GGUCA--GCGCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 93873 0.76 0.164889
Target:  5'- cCGGCU--UGCCGGUCgGCGGGCcCGCGGg -3'
miRNA:   3'- -GCCGAggGCGGUCAG-CGCUCG-GCGCC- -5'
5731 5' -63.9 NC_001806.1 + 4961 0.75 0.168456
Target:  5'- gGGCccucccgUCCCGCCGggcGUCGuCGAGUCGUGGg -3'
miRNA:   3'- gCCG-------AGGGCGGU---CAGC-GCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 96459 0.75 0.171685
Target:  5'- gCGGCUCCgaguucccccggcaCGCCuggGGUCGCG-GCCGCGa -3'
miRNA:   3'- -GCCGAGG--------------GCGG---UCAGCGCuCGGCGCc -5'
5731 5' -63.9 NC_001806.1 + 102433 0.75 0.181277
Target:  5'- gCGGCcCCCGCCGGcCGCGAaCUGCGu -3'
miRNA:   3'- -GCCGaGGGCGGUCaGCGCUcGGCGCc -5'
5731 5' -63.9 NC_001806.1 + 119188 0.74 0.208556
Target:  5'- uGGCgccgccgcCCCGCCGGcCGCGAaggagGCUGCGGc -3'
miRNA:   3'- gCCGa-------GGGCGGUCaGCGCU-----CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 67612 0.74 0.218409
Target:  5'- aCGGUacUCCCGCCccacacggaaggGGUUGCGGGuaGCGGa -3'
miRNA:   3'- -GCCG--AGGGCGG------------UCAGCGCUCggCGCC- -5'
5731 5' -63.9 NC_001806.1 + 22648 0.74 0.223483
Target:  5'- gCGGUgCCCGCCGGguaCGGcGCCGCGGg -3'
miRNA:   3'- -GCCGaGGGCGGUCagcGCU-CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 86656 0.73 0.228656
Target:  5'- aCGGCcgucagCCCGgCGGcCGUGAgGCCGCGGc -3'
miRNA:   3'- -GCCGa-----GGGCgGUCaGCGCU-CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 11649 0.73 0.228656
Target:  5'- uGGgUCaCCGUUAGcgcguaUCGCGAGUCGCGGg -3'
miRNA:   3'- gCCgAG-GGCGGUC------AGCGCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 43277 0.73 0.239307
Target:  5'- gCGGCcgUUCCGCCcucGGagGCgGAGCCGCGGc -3'
miRNA:   3'- -GCCG--AGGGCGG---UCagCG-CUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 107034 0.73 0.256057
Target:  5'- uGGCcgCCCGCgGGgcCGCGGgcuguGCCGCGGa -3'
miRNA:   3'- gCCGa-GGGCGgUCa-GCGCU-----CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 96612 0.73 0.256057
Target:  5'- cCGcGC-CCCGCCGGcgacaaCGCGAccgucGCCGCGGg -3'
miRNA:   3'- -GC-CGaGGGCGGUCa-----GCGCU-----CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 26956 0.72 0.26775
Target:  5'- uCGGCcgCCCGCC--UgGCGcGCCGCGGc -3'
miRNA:   3'- -GCCGa-GGGCGGucAgCGCuCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 22966 0.72 0.273756
Target:  5'- aCGcGC-CCCGCCugcgcgcguGGcugCGCGAGCUGCGGu -3'
miRNA:   3'- -GC-CGaGGGCGG---------UCa--GCGCUCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 57731 0.72 0.27987
Target:  5'- aCGGCUUCCGCUccGGgCGUcugGAGCgGCGGg -3'
miRNA:   3'- -GCCGAGGGCGG--UCaGCG---CUCGgCGCC- -5'
5731 5' -63.9 NC_001806.1 + 103509 0.71 0.312068
Target:  5'- uGGCUCCCGCCGGaUCcaaaUGAGUcuucggaccuCGCGGg -3'
miRNA:   3'- gCCGAGGGCGGUC-AGc---GCUCG----------GCGCC- -5'
5731 5' -63.9 NC_001806.1 + 3323 0.71 0.325712
Target:  5'- gCGGggCCCGCgGGUCccucCG-GCCGCGGg -3'
miRNA:   3'- -GCCgaGGGCGgUCAGc---GCuCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 52531 0.71 0.339795
Target:  5'- uGGCgUCUCGCCGGacgaCGUGGuCCGCGGg -3'
miRNA:   3'- gCCG-AGGGCGGUCa---GCGCUcGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.