Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 2702 | 0.69 | 0.428221 |
Target: 5'- gGGCUgCCGCCgccagccgcccagggGGUCG-GGGCCcucgGCGGg -3' miRNA: 3'- gCCGAgGGCGG---------------UCAGCgCUCGG----CGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 2890 | 0.66 | 0.592891 |
Target: 5'- gGGCgUCCgCGCCGcucuucuucgucuUCGgGGGUCGCGGg -3' miRNA: 3'- gCCG-AGG-GCGGUc------------AGCgCUCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 3002 | 0.7 | 0.384643 |
Target: 5'- gCGGCggCCGCCAG-CGCGucGGCgGCGu -3' miRNA: 3'- -GCCGagGGCGGUCaGCGC--UCGgCGCc -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 3323 | 0.71 | 0.325712 |
Target: 5'- gCGGggCCCGCgGGUCccucCG-GCCGCGGg -3' miRNA: 3'- -GCCgaGGGCGgUCAGc---GCuCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 4208 | 0.69 | 0.433241 |
Target: 5'- aCGGCUcCCCGCUGacguacccGUCGCGAuaGCgCGCGu -3' miRNA: 3'- -GCCGA-GGGCGGU--------CAGCGCU--CG-GCGCc -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 4327 | 0.7 | 0.384643 |
Target: 5'- cCGGC-CaCCGCCg--CGCGGGCCcgGCGGc -3' miRNA: 3'- -GCCGaG-GGCGGucaGCGCUCGG--CGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 4737 | 0.67 | 0.540002 |
Target: 5'- gCGGC-CCCGggccggggcCCGGUCGCcGGCgGCGu -3' miRNA: 3'- -GCCGaGGGC---------GGUCAGCGcUCGgCGCc -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 4927 | 0.7 | 0.354314 |
Target: 5'- cCGGCgUCCuCGCCGG-CGuCGGugcccGCCGCGGn -3' miRNA: 3'- -GCCG-AGG-GCGGUCaGC-GCU-----CGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 4961 | 0.75 | 0.168456 |
Target: 5'- gGGCccucccgUCCCGCCGggcGUCGuCGAGUCGUGGg -3' miRNA: 3'- gCCG-------AGGGCGGU---CAGC-GCUCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 5059 | 0.66 | 0.606275 |
Target: 5'- gGGCccCCCGCUcGUCGCGgucugGGCuCGgGGu -3' miRNA: 3'- gCCGa-GGGCGGuCAGCGC-----UCG-GCgCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 5095 | 0.68 | 0.458841 |
Target: 5'- gCGGCggCCCGUCGGUggggcccgGgGAGCCGgGGc -3' miRNA: 3'- -GCCGa-GGGCGGUCAg-------CgCUCGGCgCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 5401 | 0.66 | 0.586217 |
Target: 5'- uGGCggUCCCGCgucgGGUCGUGgauccgugucggcAGCCGCGc -3' miRNA: 3'- gCCG--AGGGCGg---UCAGCGC-------------UCGGCGCc -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 5589 | 0.67 | 0.530712 |
Target: 5'- cCGGCa--CGCCGGgggccCGUG-GCCGCGGc -3' miRNA: 3'- -GCCGaggGCGGUCa----GCGCuCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 9178 | 0.66 | 0.568179 |
Target: 5'- aCGGCcguguagCCCGggGGUCGCGGGUguggcgagggCGCGGu -3' miRNA: 3'- -GCCGa------GGGCggUCAGCGCUCG----------GCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 9759 | 0.66 | 0.568179 |
Target: 5'- gGGCg-CCGUgGGUUGgGGGCgCGUGGg -3' miRNA: 3'- gCCGagGGCGgUCAGCgCUCG-GCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 10121 | 0.66 | 0.615855 |
Target: 5'- aCGGCgcgUCgGCCGGggacagacauUCuGgGAGCUGCGGg -3' miRNA: 3'- -GCCGa--GGgCGGUC----------AG-CgCUCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 11268 | 0.67 | 0.512312 |
Target: 5'- gGuGCUCCCgGCCAGU----GGCCGUGGa -3' miRNA: 3'- gC-CGAGGG-CGGUCAgcgcUCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 11649 | 0.73 | 0.228656 |
Target: 5'- uGGgUCaCCGUUAGcgcguaUCGCGAGUCGCGGg -3' miRNA: 3'- gCCgAG-GGCGGUC------AGCGCUCGGCGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 15697 | 0.66 | 0.55874 |
Target: 5'- gCGGgUCCagGCCGGUCGgGuGUacgGCGGg -3' miRNA: 3'- -GCCgAGGg-CGGUCAGCgCuCGg--CGCC- -5' |
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5731 | 5' | -63.9 | NC_001806.1 | + | 19180 | 0.67 | 0.530712 |
Target: 5'- ---aUCCCGCCgaucgggagAGcUCGUGAGCCGCaGGu -3' miRNA: 3'- gccgAGGGCGG---------UC-AGCGCUCGGCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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