miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 37841 0.71 0.469531
Target:  5'- cGGGGGGgGU-GCUUGG-CGCacGCCCCg -3'
miRNA:   3'- cUCCCCCgCAuUGGACUaGCG--CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 37923 0.67 0.73188
Target:  5'- -uGGGGGCGccggGGCCguccGUCcacccCGCCCCg -3'
miRNA:   3'- cuCCCCCGCa---UUGGac--UAGc----GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 39298 0.68 0.623736
Target:  5'- cAGGGGGU---AUgUGAUCGCacauGCCCCc -3'
miRNA:   3'- cUCCCCCGcauUGgACUAGCG----CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 40558 0.67 0.702902
Target:  5'- uGGGcGGGGCGUGAaaaUGGaaGCGCCgCg -3'
miRNA:   3'- -CUC-CCCCGCAUUgg-ACUagCGCGGgG- -5'
5732 3' -59.7 NC_001806.1 + 43222 0.71 0.497221
Target:  5'- --cGGGGCuauauGUGGCUgggGAgCGCGCCCCg -3'
miRNA:   3'- cucCCCCG-----CAUUGGa--CUaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 43728 0.7 0.544889
Target:  5'- cGGGGGGGauugggGUGACC-GAg-GCGCCCUc -3'
miRNA:   3'- -CUCCCCCg-----CAUUGGaCUagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 46644 0.7 0.535224
Target:  5'- -cGaGGGCGU--UCUGcggcGUCGCGCCCCa -3'
miRNA:   3'- cuCcCCCGCAuuGGAC----UAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 48605 0.7 0.516082
Target:  5'- uAGGGGGCGcGACCgGAccCGCaucCCCCg -3'
miRNA:   3'- cUCCCCCGCaUUGGaCUa-GCGc--GGGG- -5'
5732 3' -59.7 NC_001806.1 + 53907 0.68 0.633689
Target:  5'- --cGGGGCGcUAcagccgccgaccGCCUGcUCGUGCUCCa -3'
miRNA:   3'- cucCCCCGC-AU------------UGGACuAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 55096 0.71 0.460477
Target:  5'- cGGGGGGCGgAACaugcgGA-CGCGCaCCCa -3'
miRNA:   3'- cUCCCCCGCaUUGga---CUaGCGCG-GGG- -5'
5732 3' -59.7 NC_001806.1 + 58206 0.71 0.468622
Target:  5'- -cGGGGGuCGUGaggaagaACUUGAggGUGCCCCc -3'
miRNA:   3'- cuCCCCC-GCAU-------UGGACUagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 58491 0.7 0.52562
Target:  5'- -uGGuGGGCGUGGCaCU-AUCG-GCCCCg -3'
miRNA:   3'- cuCC-CCCGCAUUG-GAcUAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 59177 0.66 0.76382
Target:  5'- gGAGGGGGCGUAugccGCUgcgagggugggguuuUGAUgGCaGCCa- -3'
miRNA:   3'- -CUCCCCCGCAU----UGG---------------ACUAgCG-CGGgg -5'
5732 3' -59.7 NC_001806.1 + 66817 0.66 0.778429
Target:  5'- cGAGcGGGGCcggcccggGUGGCCggugUGCGCCgCCu -3'
miRNA:   3'- -CUC-CCCCG--------CAUUGGacuaGCGCGG-GG- -5'
5732 3' -59.7 NC_001806.1 + 76150 0.66 0.741387
Target:  5'- uGGGGGGCGU-GCCggcccUGCGCCa- -3'
miRNA:   3'- cUCCCCCGCAuUGGacua-GCGCGGgg -5'
5732 3' -59.7 NC_001806.1 + 77155 0.74 0.343841
Target:  5'- cGGGGGGcGCGUggcccaacacgccGACCUGA--GCGCCCg -3'
miRNA:   3'- -CUCCCC-CGCA-------------UUGGACUagCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 80019 0.66 0.741387
Target:  5'- uAGGcGGGCcgcagcGgcGCCUua-CGCGCCCCg -3'
miRNA:   3'- cUCC-CCCG------CauUGGAcuaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 80248 0.66 0.750804
Target:  5'- gGAGGGcGGUGUugcgcccggaGGCCcGGUuuccCGcCGCCCCa -3'
miRNA:   3'- -CUCCC-CCGCA----------UUGGaCUA----GC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 80336 0.71 0.490692
Target:  5'- -cGGGGGCauuugaccgucagccGCCUGucCGCGCCCCa -3'
miRNA:   3'- cuCCCCCGcau------------UGGACuaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 83921 0.71 0.487907
Target:  5'- -cGGGGGCGggGACagcugCUGuacUCGCGCCgCCg -3'
miRNA:   3'- cuCCCCCGCa-UUG-----GACu--AGCGCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.