miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 20565 0.74 0.315561
Target:  5'- gGGGcGGGGCGcgGACCcacccgcccUCGCGCCCCg -3'
miRNA:   3'- -CUC-CCCCGCa-UUGGacu------AGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 20727 0.69 0.613789
Target:  5'- cGGGGGGGCGgggGGCCggcGGccucCGCuGCUCCu -3'
miRNA:   3'- -CUCCCCCGCa--UUGGa--CUa---GCG-CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 20995 0.67 0.73188
Target:  5'- -cGGGGGuCGUcgggguCCgugGGUCuCGCCCCc -3'
miRNA:   3'- cuCCCCC-GCAuu----GGa--CUAGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 22605 0.68 0.673415
Target:  5'- cGAGGGGGuCGccGCC--GUCGCcGCCgCCg -3'
miRNA:   3'- -CUCCCCC-GCauUGGacUAGCG-CGG-GG- -5'
5732 3' -59.7 NC_001806.1 + 22724 0.68 0.673415
Target:  5'- cGGGGGGCGacGACCccGA-CGCcGCCCg -3'
miRNA:   3'- cUCCCCCGCa-UUGGa-CUaGCG-CGGGg -5'
5732 3' -59.7 NC_001806.1 + 24897 0.7 0.506614
Target:  5'- -uGGGGGCGgaggcgGGCUUGGcCaCGCCCCc -3'
miRNA:   3'- cuCCCCCGCa-----UUGGACUaGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 25410 0.69 0.613789
Target:  5'- gGAGGGGGCGaggGGCgguggUGGUgcgcggGCGCCCCc -3'
miRNA:   3'- -CUCCCCCGCa--UUGg----ACUAg-----CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 26712 0.73 0.357496
Target:  5'- cGGGGGGCGgggcUGACCccucccacccccccUCGCGCCCCu -3'
miRNA:   3'- cUCCCCCGC----AUUGGacu-----------AGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 26836 0.73 0.391626
Target:  5'- gGAGGGGGCGccggAGCCccc-CGCGaCCCCc -3'
miRNA:   3'- -CUCCCCCGCa---UUGGacuaGCGC-GGGG- -5'
5732 3' -59.7 NC_001806.1 + 27766 0.66 0.769333
Target:  5'- -uGGGGGac--ACCgGGUUGgGCCCCc -3'
miRNA:   3'- cuCCCCCgcauUGGaCUAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 28612 0.66 0.741387
Target:  5'- -uGGGGGCGUGGuccccaCUGAcucauaCGCagGCCCCc -3'
miRNA:   3'- cuCCCCCGCAUUg-----GACUa-----GCG--CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 29220 0.72 0.43738
Target:  5'- cGAGGGcGaCGUGugcGCCgugugcacggaugaGAUCGCGCCCCa -3'
miRNA:   3'- -CUCCCcC-GCAU---UGGa-------------CUAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 29705 1.1 0.001223
Target:  5'- gGAGGGGGCGUAACCUGAUCGCGCCCCc -3'
miRNA:   3'- -CUCCCCCGCAUUGGACUAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 30032 0.68 0.643641
Target:  5'- aGGcGGGGCGgccgaggGGCCgGA-CGgGCCCCc -3'
miRNA:   3'- cUC-CCCCGCa------UUGGaCUaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 30263 0.66 0.760122
Target:  5'- --cGGGGCccGGCCcc--CGCGCCCCg -3'
miRNA:   3'- cucCCCCGcaUUGGacuaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 30641 0.73 0.37549
Target:  5'- cGGGGGGGCGcGGCCaGggUGgGCCCg -3'
miRNA:   3'- -CUCCCCCGCaUUGGaCuaGCgCGGGg -5'
5732 3' -59.7 NC_001806.1 + 31372 0.69 0.60187
Target:  5'- gGAGGGGGgGgucgGGCgCUGGguggucucuggcCGCGCCCa -3'
miRNA:   3'- -CUCCCCCgCa---UUG-GACUa-----------GCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 33364 0.68 0.643641
Target:  5'- aGGGGGGcccggagagccGCGgcACCcgGA-CGCGCCCg -3'
miRNA:   3'- -CUCCCC-----------CGCauUGGa-CUaGCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 34312 0.68 0.673415
Target:  5'- cGGGGGGCGgcgcGCCggacgGggCGCuggagauaacgGCCCCc -3'
miRNA:   3'- cUCCCCCGCau--UGGa----CuaGCG-----------CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 34797 0.66 0.749867
Target:  5'- gGGGGGGGCGggaAACCaaGUaggcccgcccaucCGCGgCCCCu -3'
miRNA:   3'- -CUCCCCCGCa--UUGGacUA-------------GCGC-GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.