miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 55096 0.71 0.460477
Target:  5'- cGGGGGGCGgAACaugcgGA-CGCGCaCCCa -3'
miRNA:   3'- cUCCCCCGCaUUGga---CUaGCGCG-GGG- -5'
5732 3' -59.7 NC_001806.1 + 58206 0.71 0.468622
Target:  5'- -cGGGGGuCGUGaggaagaACUUGAggGUGCCCCc -3'
miRNA:   3'- cuCCCCC-GCAU-------UGGACUagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 37841 0.71 0.469531
Target:  5'- cGGGGGGgGU-GCUUGG-CGCacGCCCCg -3'
miRNA:   3'- cUCCCCCgCAuUGGACUaGCG--CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 97705 0.71 0.469531
Target:  5'- -uGGGGGCuu--UCUGAUCGCguaccaGCCCCu -3'
miRNA:   3'- cuCCCCCGcauuGGACUAGCG------CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 151445 0.71 0.469531
Target:  5'- cGGGGGGCGgcggcggggcGGCCgcgGG-CGCGCUCCu -3'
miRNA:   3'- cUCCCCCGCa---------UUGGa--CUaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147299 0.71 0.473178
Target:  5'- aGGGGGGUcccgggcccacCCUGGcCGCGCCCCc -3'
miRNA:   3'- cUCCCCCGcauu-------GGACUaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 9138 0.71 0.478676
Target:  5'- gGAGGGGGCGUcgacAGCCUGGagG-GCCa- -3'
miRNA:   3'- -CUCCCCCGCA----UUGGACUagCgCGGgg -5'
5732 3' -59.7 NC_001806.1 + 83921 0.71 0.487907
Target:  5'- -cGGGGGCGggGACagcugCUGuacUCGCGCCgCCg -3'
miRNA:   3'- cuCCCCCGCa-UUG-----GACu--AGCGCGG-GG- -5'
5732 3' -59.7 NC_001806.1 + 80336 0.71 0.490692
Target:  5'- -cGGGGGCauuugaccgucagccGCCUGucCGCGCCCCa -3'
miRNA:   3'- cuCCCCCGcau------------UGGACuaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 112801 0.71 0.497221
Target:  5'- -uGGuGGGCGccaugGACCUGAcguUCGUccuGCCCCu -3'
miRNA:   3'- cuCC-CCCGCa----UUGGACU---AGCG---CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 43222 0.71 0.497221
Target:  5'- --cGGGGCuauauGUGGCUgggGAgCGCGCCCCg -3'
miRNA:   3'- cucCCCCG-----CAUUGGa--CUaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 24897 0.7 0.506614
Target:  5'- -uGGGGGCGgaggcgGGCUUGGcCaCGCCCCc -3'
miRNA:   3'- cuCCCCCGCa-----UUGGACUaGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 4421 0.7 0.506614
Target:  5'- aGAGGGGGgGUGGCCcGggCGggggcggcgucCGCCCg -3'
miRNA:   3'- -CUCCCCCgCAUUGGaCuaGC-----------GCGGGg -5'
5732 3' -59.7 NC_001806.1 + 48605 0.7 0.516082
Target:  5'- uAGGGGGCGcGACCgGAccCGCaucCCCCg -3'
miRNA:   3'- cUCCCCCGCaUUGGaCUa-GCGc--GGGG- -5'
5732 3' -59.7 NC_001806.1 + 119614 0.7 0.516082
Target:  5'- -cGGGGGCcgcuuuGUGGCCcca--GCGCCCCa -3'
miRNA:   3'- cuCCCCCG------CAUUGGacuagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5662 0.7 0.516082
Target:  5'- uGGGcGGGGCGcgagGGCgggugGGUcCGCGCCCCg -3'
miRNA:   3'- -CUC-CCCCGCa---UUGga---CUA-GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 58491 0.7 0.52562
Target:  5'- -uGGuGGGCGUGGCaCU-AUCG-GCCCCg -3'
miRNA:   3'- cuCC-CCCGCAUUG-GAcUAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 11338 0.7 0.535224
Target:  5'- cGGGGGGCGUcggaAGCCcag-C-CGCCCCa -3'
miRNA:   3'- cUCCCCCGCA----UUGGacuaGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 46644 0.7 0.535224
Target:  5'- -cGaGGGCGU--UCUGcggcGUCGCGCCCCa -3'
miRNA:   3'- cuCcCCCGCAuuGGAC----UAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 6771 0.7 0.544889
Target:  5'- aAGGGGGCGUgagGACCgGGagGCGgCCa -3'
miRNA:   3'- cUCCCCCGCA---UUGGaCUagCGCgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.