miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 29705 1.1 0.001223
Target:  5'- gGAGGGGGCGUAACCUGAUCGCGCCCCc -3'
miRNA:   3'- -CUCCCCCGCAUUGGACUAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 9535 0.8 0.147438
Target:  5'- cGGGGGGGCcagccacggGACCUGGUCGCGUucuCCCu -3'
miRNA:   3'- -CUCCCCCGca-------UUGGACUAGCGCG---GGG- -5'
5732 3' -59.7 NC_001806.1 + 147505 0.79 0.171075
Target:  5'- gGAGGGGGCGgcGCCgcggGAgggccCGUGCCCa -3'
miRNA:   3'- -CUCCCCCGCauUGGa---CUa----GCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 19488 0.75 0.289072
Target:  5'- aGAGGGGGCGggaagggcgcuugcGCUUGcgCGUGCCCa -3'
miRNA:   3'- -CUCCCCCGCau------------UGGACuaGCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 91197 0.74 0.315561
Target:  5'- cGucGGGGCGU-ACCUGG-CGCGCgCCg -3'
miRNA:   3'- -CucCCCCGCAuUGGACUaGCGCGgGG- -5'
5732 3' -59.7 NC_001806.1 + 20565 0.74 0.315561
Target:  5'- gGGGcGGGGCGcgGACCcacccgcccUCGCGCCCCg -3'
miRNA:   3'- -CUC-CCCCGCa-UUGGacu------AGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 92318 0.74 0.322641
Target:  5'- gGAGGGGGCG--GCU--AUCuGCGCCCCc -3'
miRNA:   3'- -CUCCCCCGCauUGGacUAG-CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147796 0.74 0.32984
Target:  5'- cGGGGGGCGgaGCCUGGcauggGCGCCgCg -3'
miRNA:   3'- cUCCCCCGCauUGGACUag---CGCGGgG- -5'
5732 3' -59.7 NC_001806.1 + 77155 0.74 0.343841
Target:  5'- cGGGGGGcGCGUggcccaacacgccGACCUGA--GCGCCCg -3'
miRNA:   3'- -CUCCCC-CGCA-------------UUGGACUagCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 26712 0.73 0.357496
Target:  5'- cGGGGGGCGgggcUGACCccucccacccccccUCGCGCCCCu -3'
miRNA:   3'- cUCCCCCGC----AUUGGacu-----------AGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 148242 0.73 0.37549
Target:  5'- cGGGGGGCGcGAUCaGGUUaCGCCCCc -3'
miRNA:   3'- cUCCCCCGCaUUGGaCUAGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 30641 0.73 0.37549
Target:  5'- cGGGGGGGCGcGGCCaGggUGgGCCCg -3'
miRNA:   3'- -CUCCCCCGCaUUGGaCuaGCgCGGGg -5'
5732 3' -59.7 NC_001806.1 + 150248 0.73 0.383502
Target:  5'- --aGGGGCuUGGCCUGcGUCgGUGCCCCg -3'
miRNA:   3'- cucCCCCGcAUUGGAC-UAG-CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 149933 0.73 0.391626
Target:  5'- aGAGGGGGCGgcccgagucuGCCUGGcugcUGCGUCUCg -3'
miRNA:   3'- -CUCCCCCGCau--------UGGACUa---GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 26836 0.73 0.391626
Target:  5'- gGAGGGGGCGccggAGCCccc-CGCGaCCCCc -3'
miRNA:   3'- -CUCCCCCGCa---UUGGacuaGCGC-GGGG- -5'
5732 3' -59.7 NC_001806.1 + 1338 0.73 0.391626
Target:  5'- -cGGGGGCGUGGCCaagccCGCcuccGCCCCc -3'
miRNA:   3'- cuCCCCCGCAUUGGacua-GCG----CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 1494 0.72 0.408208
Target:  5'- cGGGGGGGCGUcgUC--GUCGgGCUCCa -3'
miRNA:   3'- -CUCCCCCGCAuuGGacUAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5770 0.72 0.416662
Target:  5'- cAGGGGGCGggGCC----CGgGCCCCg -3'
miRNA:   3'- cUCCCCCGCauUGGacuaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 95302 0.72 0.416662
Target:  5'- cGGGGGGCGcGGCg-GA-CGCGCCCa -3'
miRNA:   3'- cUCCCCCGCaUUGgaCUaGCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 29220 0.72 0.43738
Target:  5'- cGAGGGcGaCGUGugcGCCgugugcacggaugaGAUCGCGCCCCa -3'
miRNA:   3'- -CUCCCcC-GCAU---UGGa-------------CUAGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.