miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 1338 0.73 0.391626
Target:  5'- -cGGGGGCGUGGCCaagccCGCcuccGCCCCc -3'
miRNA:   3'- cuCCCCCGCAUUGGacua-GCG----CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 1494 0.72 0.408208
Target:  5'- cGGGGGGGCGUcgUC--GUCGgGCUCCa -3'
miRNA:   3'- -CUCCCCCGCAuuGGacUAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 1566 0.68 0.623736
Target:  5'- -cGGGccGGCGcgcACCgccUCGCGCCCCa -3'
miRNA:   3'- cuCCC--CCGCau-UGGacuAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 2764 0.66 0.750804
Target:  5'- -cGGGGcGCGggcgGGCCUGcgCcgcgGCGgCCCg -3'
miRNA:   3'- cuCCCC-CGCa---UUGGACuaG----CGCgGGG- -5'
5732 3' -59.7 NC_001806.1 + 2815 0.66 0.750804
Target:  5'- -cGGGGGCGg-----GcUCGgGCCCCg -3'
miRNA:   3'- cuCCCCCGCauuggaCuAGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 3349 0.67 0.683287
Target:  5'- cGGGGGGC-UGGCg-GGcCGgGCCCCg -3'
miRNA:   3'- cUCCCCCGcAUUGgaCUaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 3512 0.68 0.653585
Target:  5'- -uGGcGGGCGgcGUCggGGUCGuCGCCCCc -3'
miRNA:   3'- cuCC-CCCGCauUGGa-CUAGC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 4421 0.7 0.506614
Target:  5'- aGAGGGGGgGUGGCCcGggCGggggcggcgucCGCCCg -3'
miRNA:   3'- -CUCCCCCgCAUUGGaCuaGC-----------GCGGGg -5'
5732 3' -59.7 NC_001806.1 + 4828 0.66 0.750804
Target:  5'- cGGGGcGGCGaGGCCgcggGGUCGgGCgUCg -3'
miRNA:   3'- cUCCC-CCGCaUUGGa---CUAGCgCGgGG- -5'
5732 3' -59.7 NC_001806.1 + 5235 0.69 0.564382
Target:  5'- gGAGGGGGCGaGACCcacgGAcccCGaCGaCCCCc -3'
miRNA:   3'- -CUCCCCCGCaUUGGa---CUa--GC-GC-GGGG- -5'
5732 3' -59.7 NC_001806.1 + 5598 0.69 0.593941
Target:  5'- -cGGGGGCccGUGGCCgcggcccguUGGUCGaacccccgGCCCCg -3'
miRNA:   3'- cuCCCCCG--CAUUGG---------ACUAGCg-------CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5662 0.7 0.516082
Target:  5'- uGGGcGGGGCGcgagGGCgggugGGUcCGCGCCCCg -3'
miRNA:   3'- -CUC-CCCCGCa---UUGga---CUA-GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5770 0.72 0.416662
Target:  5'- cAGGGGGCGggGCC----CGgGCCCCg -3'
miRNA:   3'- cUCCCCCGCauUGGacuaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 6771 0.7 0.544889
Target:  5'- aAGGGGGCGUgagGACCgGGagGCGgCCa -3'
miRNA:   3'- cUCCCCCGCA---UUGGaCUagCGCgGGg -5'
5732 3' -59.7 NC_001806.1 + 9138 0.71 0.478676
Target:  5'- gGAGGGGGCGUcgacAGCCUGGagG-GCCa- -3'
miRNA:   3'- -CUCCCCCGCA----UUGGACUagCgCGGgg -5'
5732 3' -59.7 NC_001806.1 + 9535 0.8 0.147438
Target:  5'- cGGGGGGGCcagccacggGACCUGGUCGCGUucuCCCu -3'
miRNA:   3'- -CUCCCCCGca-------UUGGACUAGCGCG---GGG- -5'
5732 3' -59.7 NC_001806.1 + 10704 0.66 0.778429
Target:  5'- cGGGGGGGCGUAcGCC--AUCGCcaGCgggaCCg -3'
miRNA:   3'- -CUCCCCCGCAU-UGGacUAGCG--CGg---GG- -5'
5732 3' -59.7 NC_001806.1 + 11338 0.7 0.535224
Target:  5'- cGGGGGGCGUcggaAGCCcag-C-CGCCCCa -3'
miRNA:   3'- cUCCCCCGCA----UUGGacuaGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 16620 0.7 0.55461
Target:  5'- -cGGGGGaggGAUgUGGUCGUugGCCCCg -3'
miRNA:   3'- cuCCCCCgcaUUGgACUAGCG--CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 19488 0.75 0.289072
Target:  5'- aGAGGGGGCGggaagggcgcuugcGCUUGcgCGUGCCCa -3'
miRNA:   3'- -CUCCCCCGCau------------UGGACuaGCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.