miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 151445 0.71 0.469531
Target:  5'- cGGGGGGCGgcggcggggcGGCCgcgGG-CGCGCUCCu -3'
miRNA:   3'- cUCCCCCGCa---------UUGGa--CUaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 151230 0.67 0.693118
Target:  5'- cGAGGGGGgGUGGgaggGGUCa-GCCCCg -3'
miRNA:   3'- -CUCCCCCgCAUUgga-CUAGcgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 150248 0.73 0.383502
Target:  5'- --aGGGGCuUGGCCUGcGUCgGUGCCCCg -3'
miRNA:   3'- cucCCCCGcAUUGGAC-UAG-CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 149933 0.73 0.391626
Target:  5'- aGAGGGGGCGgcccgagucuGCCUGGcugcUGCGUCUCg -3'
miRNA:   3'- -CUCCCCCGCau--------UGGACUa---GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 148242 0.73 0.37549
Target:  5'- cGGGGGGCGcGAUCaGGUUaCGCCCCc -3'
miRNA:   3'- cUCCCCCGCaUUGGaCUAGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 148126 0.67 0.693118
Target:  5'- uGGGGGGCu--GCgUGAga-CGCCCCg -3'
miRNA:   3'- cUCCCCCGcauUGgACUagcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147796 0.74 0.32984
Target:  5'- cGGGGGGCGgaGCCUGGcauggGCGCCgCg -3'
miRNA:   3'- cUCCCCCGCauUGGACUag---CGCGGgG- -5'
5732 3' -59.7 NC_001806.1 + 147684 0.66 0.769333
Target:  5'- -cGGGGGCcggGGCgCggGggCGgGCCCCg -3'
miRNA:   3'- cuCCCCCGca-UUG-Ga-CuaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147660 0.67 0.693118
Target:  5'- cGGGGcGGGCG--GCCgGcUC-CGCCCCg -3'
miRNA:   3'- -CUCC-CCCGCauUGGaCuAGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147505 0.79 0.171075
Target:  5'- gGAGGGGGCGgcGCCgcggGAgggccCGUGCCCa -3'
miRNA:   3'- -CUCCCCCGCauUGGa---CUa----GCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 147408 0.66 0.750804
Target:  5'- gGGGGGaGGgGUuuuCCUGGcccgaccCGCGCCUCu -3'
miRNA:   3'- -CUCCC-CCgCAuu-GGACUa------GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147299 0.71 0.473178
Target:  5'- aGGGGGGUcccgggcccacCCUGGcCGCGCCCCc -3'
miRNA:   3'- cUCCCCCGcauu-------GGACUaGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 146614 0.69 0.568303
Target:  5'- cGGGGGGCGUcccuuAuuguuuucccucgucCCgGGUCGaCGCCCCc -3'
miRNA:   3'- cUCCCCCGCAu----U---------------GGaCUAGC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 145238 0.7 0.544889
Target:  5'- aGAGGGGGgG-GACCcaaacgacaGGggGCGCCCCa -3'
miRNA:   3'- -CUCCCCCgCaUUGGa--------CUagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 143620 0.68 0.623736
Target:  5'- -cGGGGGcCGUuAUCUcca-GCGCCCCg -3'
miRNA:   3'- cuCCCCC-GCAuUGGAcuagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 143116 0.69 0.613789
Target:  5'- -uGGGGGCGUGGCUgccgGGagGgGCCgCg -3'
miRNA:   3'- cuCCCCCGCAUUGGa---CUagCgCGGgG- -5'
5732 3' -59.7 NC_001806.1 + 137593 0.69 0.593941
Target:  5'- -cGGGGGCGaggaguugcggAACgaGuuUCGCGCCCUg -3'
miRNA:   3'- cuCCCCCGCa----------UUGgaCu-AGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 128987 0.66 0.750804
Target:  5'- cGGGGGGGauuUGGCCgaauggGUGCCCCg -3'
miRNA:   3'- -CUCCCCCgc-AUUGGacuag-CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 126849 0.67 0.721328
Target:  5'- gGAGGaGGGCGUAacguuccGCCUGGaggacgGCGCCg- -3'
miRNA:   3'- -CUCC-CCCGCAU-------UGGACUag----CGCGGgg -5'
5732 3' -59.7 NC_001806.1 + 122786 0.66 0.745165
Target:  5'- -cGGGGGCcaggaauuccagcuUGGCCgugUGGUCGC-CCCCg -3'
miRNA:   3'- cuCCCCCGc-------------AUUGG---ACUAGCGcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.