miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 126849 0.67 0.721328
Target:  5'- gGAGGaGGGCGUAacguuccGCCUGGaggacgGCGCCg- -3'
miRNA:   3'- -CUCC-CCCGCAU-------UGGACUag----CGCGGgg -5'
5732 3' -59.7 NC_001806.1 + 40558 0.67 0.702902
Target:  5'- uGGGcGGGGCGUGAaaaUGGaaGCGCCgCg -3'
miRNA:   3'- -CUC-CCCCGCAUUgg-ACUagCGCGGgG- -5'
5732 3' -59.7 NC_001806.1 + 148126 0.67 0.693118
Target:  5'- uGGGGGGCu--GCgUGAga-CGCCCCg -3'
miRNA:   3'- cUCCCCCGcauUGgACUagcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 147660 0.67 0.693118
Target:  5'- cGGGGcGGGCG--GCCgGcUC-CGCCCCg -3'
miRNA:   3'- -CUCC-CCCGCauUGGaCuAGcGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 102960 0.67 0.693118
Target:  5'- -cGGGGGCGcccCCccGUCGC-CCCCa -3'
miRNA:   3'- cuCCCCCGCauuGGacUAGCGcGGGG- -5'
5732 3' -59.7 NC_001806.1 + 151230 0.67 0.693118
Target:  5'- cGAGGGGGgGUGGgaggGGUCa-GCCCCg -3'
miRNA:   3'- -CUCCCCCgCAUUgga-CUAGcgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 3349 0.67 0.683287
Target:  5'- cGGGGGGC-UGGCg-GGcCGgGCCCCg -3'
miRNA:   3'- cUCCCCCGcAUUGgaCUaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 22724 0.68 0.673415
Target:  5'- cGGGGGGCGacGACCccGA-CGCcGCCCg -3'
miRNA:   3'- cUCCCCCGCa-UUGGa-CUaGCG-CGGGg -5'
5732 3' -59.7 NC_001806.1 + 34312 0.68 0.673415
Target:  5'- cGGGGGGCGgcgcGCCggacgGggCGCuggagauaacgGCCCCc -3'
miRNA:   3'- cUCCCCCGCau--UGGa----CuaGCG-----------CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 22605 0.68 0.673415
Target:  5'- cGAGGGGGuCGccGCC--GUCGCcGCCgCCg -3'
miRNA:   3'- -CUCCCCC-GCauUGGacUAGCG-CGG-GG- -5'
5732 3' -59.7 NC_001806.1 + 111345 0.68 0.673415
Target:  5'- gGGGGGGGgGUAuauaagGCCUGGgaUCccaCGUCCCc -3'
miRNA:   3'- -CUCCCCCgCAU------UGGACU--AGc--GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 92922 0.68 0.663512
Target:  5'- aGGGcGGGGCG-GGCCUGGagGCcgggGCCCg -3'
miRNA:   3'- -CUC-CCCCGCaUUGGACUagCG----CGGGg -5'
5732 3' -59.7 NC_001806.1 + 105142 0.68 0.663512
Target:  5'- -cGGGGGCG--GCCg---UGcCGCCCCa -3'
miRNA:   3'- cuCCCCCGCauUGGacuaGC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 89520 0.68 0.653585
Target:  5'- -cGGGcGGCG-AGCugCUGcgCgGCGCCCCg -3'
miRNA:   3'- cuCCC-CCGCaUUG--GACuaG-CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 3512 0.68 0.653585
Target:  5'- -uGGcGGGCGgcGUCggGGUCGuCGCCCCc -3'
miRNA:   3'- cuCC-CCCGCauUGGa-CUAGC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 30032 0.68 0.643641
Target:  5'- aGGcGGGGCGgccgaggGGCCgGA-CGgGCCCCc -3'
miRNA:   3'- cUC-CCCCGCa------UUGGaCUaGCgCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 33364 0.68 0.643641
Target:  5'- aGGGGGGcccggagagccGCGgcACCcgGA-CGCGCCCg -3'
miRNA:   3'- -CUCCCC-----------CGCauUGGa-CUaGCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 95958 0.68 0.643641
Target:  5'- cGGGGGGCucggGugCUGAUUGgGCCg- -3'
miRNA:   3'- cUCCCCCGca--UugGACUAGCgCGGgg -5'
5732 3' -59.7 NC_001806.1 + 53907 0.68 0.633689
Target:  5'- --cGGGGCGcUAcagccgccgaccGCCUGcUCGUGCUCCa -3'
miRNA:   3'- cucCCCCGC-AU------------UGGACuAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 1566 0.68 0.623736
Target:  5'- -cGGGccGGCGcgcACCgccUCGCGCCCCa -3'
miRNA:   3'- cuCCC--CCGCau-UGGacuAGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.