Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5732 | 3' | -59.7 | NC_001806.1 | + | 39298 | 0.68 | 0.623736 |
Target: 5'- cAGGGGGU---AUgUGAUCGCacauGCCCCc -3' miRNA: 3'- cUCCCCCGcauUGgACUAGCG----CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 121567 | 0.68 | 0.623736 |
Target: 5'- cGGGGGGCu--GCgaGuccUGCGCCCCg -3' miRNA: 3'- cUCCCCCGcauUGgaCua-GCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 143620 | 0.68 | 0.623736 |
Target: 5'- -cGGGGGcCGUuAUCUcca-GCGCCCCg -3' miRNA: 3'- cuCCCCC-GCAuUGGAcuagCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 143116 | 0.69 | 0.613789 |
Target: 5'- -uGGGGGCGUGGCUgccgGGagGgGCCgCg -3' miRNA: 3'- cuCCCCCGCAUUGGa---CUagCgCGGgG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 89057 | 0.69 | 0.613789 |
Target: 5'- -uGGGGGCGc-GCUUGAggugaccgUCGUGCaCCCc -3' miRNA: 3'- cuCCCCCGCauUGGACU--------AGCGCG-GGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 25410 | 0.69 | 0.613789 |
Target: 5'- gGAGGGGGCGaggGGCgguggUGGUgcgcggGCGCCCCc -3' miRNA: 3'- -CUCCCCCGCa--UUGg----ACUAg-----CGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 20727 | 0.69 | 0.613789 |
Target: 5'- cGGGGGGGCGgggGGCCggcGGccucCGCuGCUCCu -3' miRNA: 3'- -CUCCCCCGCa--UUGGa--CUa---GCG-CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 31372 | 0.69 | 0.60187 |
Target: 5'- gGAGGGGGgGgucgGGCgCUGGguggucucuggcCGCGCCCa -3' miRNA: 3'- -CUCCCCCgCa---UUG-GACUa-----------GCGCGGGg -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 5598 | 0.69 | 0.593941 |
Target: 5'- -cGGGGGCccGUGGCCgcggcccguUGGUCGaacccccgGCCCCg -3' miRNA: 3'- cuCCCCCG--CAUUGG---------ACUAGCg-------CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 137593 | 0.69 | 0.593941 |
Target: 5'- -cGGGGGCGaggaguugcggAACgaGuuUCGCGCCCUg -3' miRNA: 3'- cuCCCCCGCa----------UUGgaCu-AGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 94538 | 0.69 | 0.584053 |
Target: 5'- -uGGGGGCGguggggucgGGCCUuAUCGUcCCCCc -3' miRNA: 3'- cuCCCCCGCa--------UUGGAcUAGCGcGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 109044 | 0.69 | 0.584053 |
Target: 5'- gGAGGGGGCucaGGCCcaa-CGCGgCCCCg -3' miRNA: 3'- -CUCCCCCGca-UUGGacuaGCGC-GGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 146614 | 0.69 | 0.568303 |
Target: 5'- cGGGGGGCGUcccuuAuuguuuucccucgucCCgGGUCGaCGCCCCc -3' miRNA: 3'- cUCCCCCGCAu----U---------------GGaCUAGC-GCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 5235 | 0.69 | 0.564382 |
Target: 5'- gGAGGGGGCGaGACCcacgGAcccCGaCGaCCCCc -3' miRNA: 3'- -CUCCCCCGCaUUGGa---CUa--GC-GC-GGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 16620 | 0.7 | 0.55461 |
Target: 5'- -cGGGGGaggGAUgUGGUCGUugGCCCCg -3' miRNA: 3'- cuCCCCCgcaUUGgACUAGCG--CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 43728 | 0.7 | 0.544889 |
Target: 5'- cGGGGGGGauugggGUGACC-GAg-GCGCCCUc -3' miRNA: 3'- -CUCCCCCg-----CAUUGGaCUagCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 145238 | 0.7 | 0.544889 |
Target: 5'- aGAGGGGGgG-GACCcaaacgacaGGggGCGCCCCa -3' miRNA: 3'- -CUCCCCCgCaUUGGa--------CUagCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 6771 | 0.7 | 0.544889 |
Target: 5'- aAGGGGGCGUgagGACCgGGagGCGgCCa -3' miRNA: 3'- cUCCCCCGCA---UUGGaCUagCGCgGGg -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 46644 | 0.7 | 0.535224 |
Target: 5'- -cGaGGGCGU--UCUGcggcGUCGCGCCCCa -3' miRNA: 3'- cuCcCCCGCAuuGGAC----UAGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 11338 | 0.7 | 0.535224 |
Target: 5'- cGGGGGGCGUcggaAGCCcag-C-CGCCCCa -3' miRNA: 3'- cUCCCCCGCA----UUGGacuaGcGCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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