miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 137958 0.69 0.645091
Target:  5'- cUGCAaccGCAcGCUGCGcgaguaCGCCCGCCu -3'
miRNA:   3'- aACGU---CGUcUGAUGCaug---GCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 133066 0.69 0.655329
Target:  5'- cUGCGGCAGcucCUGgGUgggguaauggccGCCGUCUGCCu -3'
miRNA:   3'- aACGUCGUCu--GAUgCA------------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 4909 0.69 0.664527
Target:  5'- -cGCGGCgAGACgGCGUccccggcguccucGCCggcgucgguGCCCGCCg -3'
miRNA:   3'- aaCGUCG-UCUGaUGCA-------------UGG---------CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 96124 0.69 0.665549
Target:  5'- gUUGCGccGCccGGACUGCa-GCCGCCCGaCCu -3'
miRNA:   3'- -AACGU--CG--UCUGAUGcaUGGCGGGC-GG- -5'
5732 5' -57.3 NC_001806.1 + 135118 0.69 0.665549
Target:  5'- -gGgGGCAGcGCUGCGUGCuggaCGUCCGCg -3'
miRNA:   3'- aaCgUCGUC-UGAUGCAUG----GCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 105318 0.69 0.675741
Target:  5'- aUGCAuGUcuuuauccuGGAUUACGaccaAUCGCCCGCCg -3'
miRNA:   3'- aACGU-CG---------UCUGAUGCa---UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 42789 0.69 0.675741
Target:  5'- cUGUAGCGcGGCgACGUcguCCGCUCGCUc -3'
miRNA:   3'- aACGUCGU-CUGaUGCAu--GGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 119865 0.69 0.685897
Target:  5'- gUGgGGCGGGCgACG---CGCCCGCCc -3'
miRNA:   3'- aACgUCGUCUGaUGCaugGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 123926 0.69 0.685897
Target:  5'- -gGCGGCcaaACUGa--ACCGCCCGCCc -3'
miRNA:   3'- aaCGUCGuc-UGAUgcaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 125860 0.69 0.685897
Target:  5'- -cGCcGCGGACgcCGUGgCGCCCcgGCCc -3'
miRNA:   3'- aaCGuCGUCUGauGCAUgGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 39939 0.69 0.693991
Target:  5'- gUGCAGCGGACUGgcaccgaagacggUGUACCacacgagcacgagGCCguaCGCCg -3'
miRNA:   3'- aACGUCGUCUGAU-------------GCAUGG-------------CGG---GCGG- -5'
5732 5' -57.3 NC_001806.1 + 119479 0.69 0.696009
Target:  5'- -aGC-GCGGACcggGCGUGCgGCCUGUg -3'
miRNA:   3'- aaCGuCGUCUGa--UGCAUGgCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 74648 0.69 0.696009
Target:  5'- cUGCGGCAGGC-GCGggccauggaUGCCGCCaaGCUg -3'
miRNA:   3'- aACGUCGUCUGaUGC---------AUGGCGGg-CGG- -5'
5732 5' -57.3 NC_001806.1 + 69291 0.68 0.706067
Target:  5'- cUGCAGCAGACguggACGUugauccagaauACCaauucGCCCuCCg -3'
miRNA:   3'- aACGUCGUCUGa---UGCA-----------UGG-----CGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 50060 0.68 0.706067
Target:  5'- -gGCGGCAGuucgcgagccucACgGCGUugCGuCCCGUCg -3'
miRNA:   3'- aaCGUCGUC------------UGaUGCAugGC-GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 26942 0.68 0.706067
Target:  5'- cUGguGUcuGGGCcuCG-GCCGCCCGCCu -3'
miRNA:   3'- aACguCG--UCUGauGCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 20294 0.68 0.716063
Target:  5'- -gGCGGCcccgcccccuugGGGCg--GUcCCGCCCGCCg -3'
miRNA:   3'- aaCGUCG------------UCUGaugCAuGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 64201 0.68 0.716063
Target:  5'- cUGgaAGaCGGACUccAUGUAgUGCCCGCCa -3'
miRNA:   3'- aACg-UC-GUCUGA--UGCAUgGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 128520 0.68 0.716063
Target:  5'- gUGCGGCAuGGCcaUGCGgGCCGCa-GCCa -3'
miRNA:   3'- aACGUCGU-CUG--AUGCaUGGCGggCGG- -5'
5732 5' -57.3 NC_001806.1 + 89894 0.68 0.725986
Target:  5'- -cGCAG-GGACcccGCGuUGCCGgCCGCCg -3'
miRNA:   3'- aaCGUCgUCUGa--UGC-AUGGCgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.