miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 61537 0.67 0.79266
Target:  5'- -cGCGGuCGGGCggggGCuugGCgUGCCCGCCg -3'
miRNA:   3'- aaCGUC-GUCUGa---UGca-UG-GCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 77068 0.67 0.79266
Target:  5'- --cCAGCgGGACUACGagcGCCuuCCCGCCa -3'
miRNA:   3'- aacGUCG-UCUGAUGCa--UGGc-GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 1333 0.67 0.79266
Target:  5'- -cGCcGCGGGg-GCGUgGCCaaGCCCGCCu -3'
miRNA:   3'- aaCGuCGUCUgaUGCA-UGG--CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 21548 0.67 0.79266
Target:  5'- -cGCGGCgcguauccGGACcccACGgACCGCCUGUCg -3'
miRNA:   3'- aaCGUCG--------UCUGa--UGCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 37628 0.67 0.783499
Target:  5'- -cGCGGCGGGaaACG-GCUGCCCcCCa -3'
miRNA:   3'- aaCGUCGUCUgaUGCaUGGCGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 77387 0.67 0.783499
Target:  5'- -gGC-GCGGGCgcgGCGgcCgCGCCCGCg -3'
miRNA:   3'- aaCGuCGUCUGa--UGCauG-GCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 151116 0.67 0.783499
Target:  5'- -cGCGGgGGGCUccgGCGcccccuccCCGCCCGCg -3'
miRNA:   3'- aaCGUCgUCUGA---UGCau------GGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 78598 0.67 0.774201
Target:  5'- -gGcCAGCAcGuCgcCGUGCCGgCCGCCg -3'
miRNA:   3'- aaC-GUCGU-CuGauGCAUGGCgGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22872 0.67 0.773264
Target:  5'- -gGCGGCcgucccgGGGCUGgcCGggGCCcgGCCCGCCa -3'
miRNA:   3'- aaCGUCG-------UCUGAU--GCa-UGG--CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 27201 0.67 0.771387
Target:  5'- -gGCAGgAGccgcgcauauauacGCUugGaGCCaGCCCGCCc -3'
miRNA:   3'- aaCGUCgUC--------------UGAugCaUGG-CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 1987 0.67 0.767617
Target:  5'- -gGCAGCAG-CUgcacgccagguagGCGUGCUgccgcgacaccgcggGCCCGUCg -3'
miRNA:   3'- aaCGUCGUCuGA-------------UGCAUGG---------------CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 5507 0.67 0.764776
Target:  5'- -aGCAGCGGAg-----GCCGCCgGCCc -3'
miRNA:   3'- aaCGUCGUCUgaugcaUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 44475 0.68 0.755233
Target:  5'- aUGCGGagggauGGCUGCacgaccgugGUGCCGUuuGCCg -3'
miRNA:   3'- aACGUCgu----CUGAUG---------CAUGGCGggCGG- -5'
5732 5' -57.3 NC_001806.1 + 83922 0.68 0.755233
Target:  5'- -gGgGGCGGggacaGCUGCuGUACuCGCgCCGCCg -3'
miRNA:   3'- aaCgUCGUC-----UGAUG-CAUG-GCG-GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 102480 0.68 0.755233
Target:  5'- -gGUAGCGGuACUGUG-GCCGgCCGCCc -3'
miRNA:   3'- aaCGUCGUC-UGAUGCaUGGCgGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 41398 0.68 0.755233
Target:  5'- -gGC-GCGGAUgcgaucCGUgaGCCGCCUGCCc -3'
miRNA:   3'- aaCGuCGUCUGau----GCA--UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 3786 0.68 0.74558
Target:  5'- -gGCGGCucauGGCcACGgcgGCCGCCgcgugCGCCa -3'
miRNA:   3'- aaCGUCGu---CUGaUGCa--UGGCGG-----GCGG- -5'
5732 5' -57.3 NC_001806.1 + 52440 0.68 0.74558
Target:  5'- -aGCAucaAGGCUugGUucgggGCCGCCCugGCCg -3'
miRNA:   3'- aaCGUcg-UCUGAugCA-----UGGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 3181 0.68 0.735829
Target:  5'- -gGCGGCcacGGCggccuCGcUGCCGCCgGCCa -3'
miRNA:   3'- aaCGUCGu--CUGau---GC-AUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 126756 0.68 0.735829
Target:  5'- cUUGguGCAgGGCUACGUGCuCGacaGCCa -3'
miRNA:   3'- -AACguCGU-CUGAUGCAUG-GCgggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.