miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 26255 0.66 0.827768
Target:  5'- -gGCGGCGGGCaGCccggGCCcCCCGCg -3'
miRNA:   3'- aaCGUCGUCUGaUGca--UGGcGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 57587 0.66 0.827768
Target:  5'- aUGguGCgAGAgUugGgcgGCCGCCaagGCCc -3'
miRNA:   3'- aACguCG-UCUgAugCa--UGGCGGg--CGG- -5'
5732 5' -57.3 NC_001806.1 + 122851 0.66 0.827768
Target:  5'- -gGCAcCAGGCUAUuaaacagcaGCCGCCgCGCCa -3'
miRNA:   3'- aaCGUcGUCUGAUGca-------UGGCGG-GCGG- -5'
5732 5' -57.3 NC_001806.1 + 116820 0.66 0.819239
Target:  5'- aUGCAG-AGugUcacGCGggagGCCGCCCaGCUc -3'
miRNA:   3'- aACGUCgUCugA---UGCa---UGGCGGG-CGG- -5'
5732 5' -57.3 NC_001806.1 + 140680 0.66 0.819239
Target:  5'- gUUGCuGCGcGGCgcccGCGUGCCGCgcuggaaCGCCc -3'
miRNA:   3'- -AACGuCGU-CUGa---UGCAUGGCGg------GCGG- -5'
5732 5' -57.3 NC_001806.1 + 124494 0.67 0.814039
Target:  5'- cUGCGGuCGGACgccgucucgcuccgGCGgGCCGuCCuCGCCg -3'
miRNA:   3'- aACGUC-GUCUGa-------------UGCaUGGC-GG-GCGG- -5'
5732 5' -57.3 NC_001806.1 + 23940 0.67 0.810539
Target:  5'- -gGCGGCGGGgcCUGgGgggGCCGCcggagugguCCGCCg -3'
miRNA:   3'- aaCGUCGUCU--GAUgCa--UGGCG---------GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22800 0.67 0.810539
Target:  5'- -cGUGGCcgucGAgUGCcugGCCGCCUGCCg -3'
miRNA:   3'- aaCGUCGu---CUgAUGca-UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 73713 0.67 0.810539
Target:  5'- cUGCAGCuucGC-GCGgccCCGCCgGCCa -3'
miRNA:   3'- aACGUCGuc-UGaUGCau-GGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 30228 0.67 0.810539
Target:  5'- -cGCGGCcguGGCcccgUGCGUGCgaGCgCCGCCu -3'
miRNA:   3'- aaCGUCGu--CUG----AUGCAUGg-CG-GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 100036 0.67 0.810539
Target:  5'- -cGCAGUAgGACUcCG-ACgGcCCCGCCu -3'
miRNA:   3'- aaCGUCGU-CUGAuGCaUGgC-GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 95592 0.67 0.810539
Target:  5'- aUGCuGCGGGuCaGCGUccacggcgagguGCUGCCCGCg -3'
miRNA:   3'- aACGuCGUCU-GaUGCA------------UGGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 3435 0.67 0.807013
Target:  5'- -cGCGGCAGGCggccaggcacucgACGgccacGCgGCCgGCCu -3'
miRNA:   3'- aaCGUCGUCUGa------------UGCa----UGgCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 23061 0.67 0.801676
Target:  5'- -gGCAGCgAGGCcgcCGUgGCCGCCgugcgCGCCg -3'
miRNA:   3'- aaCGUCG-UCUGau-GCA-UGGCGG-----GCGG- -5'
5732 5' -57.3 NC_001806.1 + 100860 0.67 0.801676
Target:  5'- -cGUAGguGACgauaGUGCCGaggcgCCGCCc -3'
miRNA:   3'- aaCGUCguCUGaug-CAUGGCg----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 28668 0.67 0.801676
Target:  5'- -gGgGGguGGggAgGaGCCGCCCGCCa -3'
miRNA:   3'- aaCgUCguCUgaUgCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 105028 0.67 0.801676
Target:  5'- -aGCGGCuugaccuGGCUAUGcugGCCGCgauUCGCCg -3'
miRNA:   3'- aaCGUCGu------CUGAUGCa--UGGCG---GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 113989 0.67 0.801676
Target:  5'- -aGCcGCGGACgccGCGgaugACCGgCCGCa -3'
miRNA:   3'- aaCGuCGUCUGa--UGCa---UGGCgGGCGg -5'
5732 5' -57.3 NC_001806.1 + 104413 0.67 0.801676
Target:  5'- -cGCGGCcauaacaaccGACguacgGCGUugCGCCCucGCCg -3'
miRNA:   3'- aaCGUCGu---------CUGa----UGCAugGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 61537 0.67 0.79266
Target:  5'- -cGCGGuCGGGCggggGCuugGCgUGCCCGCCg -3'
miRNA:   3'- aaCGUC-GUCUGa---UGca-UG-GCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.