miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 22800 0.67 0.810539
Target:  5'- -cGUGGCcgucGAgUGCcugGCCGCCUGCCg -3'
miRNA:   3'- aaCGUCGu---CUgAUGca-UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22872 0.67 0.773264
Target:  5'- -gGCGGCcgucccgGGGCUGgcCGggGCCcgGCCCGCCa -3'
miRNA:   3'- aaCGUCG-------UCUGAU--GCa-UGG--CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 23061 0.67 0.801676
Target:  5'- -gGCAGCgAGGCcgcCGUgGCCGCCgugcgCGCCg -3'
miRNA:   3'- aaCGUCG-UCUGau-GCA-UGGCGG-----GCGG- -5'
5732 5' -57.3 NC_001806.1 + 23501 0.66 0.827768
Target:  5'- -cGUGGCcGugU-CGcGCCgGCCCGCCg -3'
miRNA:   3'- aaCGUCGuCugAuGCaUGG-CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 23940 0.67 0.810539
Target:  5'- -gGCGGCGGGgcCUGgGgggGCCGCcggagugguCCGCCg -3'
miRNA:   3'- aaCGUCGUCU--GAUgCa--UGGCG---------GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 23981 0.69 0.645091
Target:  5'- -cGCGGCGGGCU--GUcCUGCCUGCUg -3'
miRNA:   3'- aaCGUCGUCUGAugCAuGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 24243 0.75 0.35304
Target:  5'- -cGCGGCAGcACgccuaccugGCGUgcgagcuGCUGCCCGCCg -3'
miRNA:   3'- aaCGUCGUC-UGa--------UGCA-------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 24431 0.66 0.852255
Target:  5'- -cGCGGCGGcaACgUGCGcUACCGCgUGCg -3'
miRNA:   3'- aaCGUCGUC--UG-AUGC-AUGGCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 25912 0.66 0.836119
Target:  5'- -gGCGGUccGGGCgGCGUGCgCGCgCGCg -3'
miRNA:   3'- aaCGUCG--UCUGaUGCAUG-GCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 26255 0.66 0.827768
Target:  5'- -gGCGGCGGGCaGCccggGCCcCCCGCg -3'
miRNA:   3'- aaCGUCGUCUGaUGca--UGGcGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 26488 0.67 0.79266
Target:  5'- -cGCGGuCAGGagcGCGcccgcgGCCGcCCCGCCg -3'
miRNA:   3'- aaCGUC-GUCUga-UGCa-----UGGC-GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 26942 0.68 0.706067
Target:  5'- cUGguGUcuGGGCcuCG-GCCGCCCGCCu -3'
miRNA:   3'- aACguCG--UCUGauGCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 27201 0.67 0.771387
Target:  5'- -gGCAGgAGccgcgcauauauacGCUugGaGCCaGCCCGCCc -3'
miRNA:   3'- aaCGUCgUC--------------UGAugCaUGG-CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 28015 0.71 0.553415
Target:  5'- -aGCcaGGCAGACU-CGgGCCGCCC-CCu -3'
miRNA:   3'- aaCG--UCGUCUGAuGCaUGGCGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 28668 0.67 0.801676
Target:  5'- -gGgGGguGGggAgGaGCCGCCCGCCa -3'
miRNA:   3'- aaCgUCguCUgaUgCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 29741 1.08 0.00219
Target:  5'- cUUGCAGCAGACUACGUACCGCCCGCCc -3'
miRNA:   3'- -AACGUCGUCUGAUGCAUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 30228 0.67 0.810539
Target:  5'- -cGCGGCcguGGCcccgUGCGUGCgaGCgCCGCCu -3'
miRNA:   3'- aaCGUCGu--CUG----AUGCAUGg-CG-GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 30291 0.7 0.634843
Target:  5'- -cGgGGCGGA--GCcgGCCGCCCGCCc -3'
miRNA:   3'- aaCgUCGUCUgaUGcaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 33760 0.72 0.475361
Target:  5'- -gGCGGCGG-CUGCGgcgGCUGCggcggCCGCCg -3'
miRNA:   3'- aaCGUCGUCuGAUGCa--UGGCG-----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 36538 0.68 0.725986
Target:  5'- -aGCAGUGGAU--UGUGCCGCUgGUCu -3'
miRNA:   3'- aaCGUCGUCUGauGCAUGGCGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.