miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 1333 0.67 0.79266
Target:  5'- -cGCcGCGGGg-GCGUgGCCaaGCCCGCCu -3'
miRNA:   3'- aaCGuCGUCUgaUGCA-UGG--CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 1987 0.67 0.767617
Target:  5'- -gGCAGCAG-CUgcacgccagguagGCGUGCUgccgcgacaccgcggGCCCGUCg -3'
miRNA:   3'- aaCGUCGUCuGA-------------UGCAUGG---------------CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 2258 0.66 0.852255
Target:  5'- -cGcCAGCAGGC-AgG-ACaGCCCGCCg -3'
miRNA:   3'- aaC-GUCGUCUGaUgCaUGgCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 2647 0.71 0.533468
Target:  5'- -aGCAGUAGGCcuccaggGCGgcgGCCGCgggcgCCGCCg -3'
miRNA:   3'- aaCGUCGUCUGa------UGCa--UGGCG-----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 3181 0.68 0.735829
Target:  5'- -gGCGGCcacGGCggccuCGcUGCCGCCgGCCa -3'
miRNA:   3'- aaCGUCGu--CUGau---GC-AUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 3435 0.67 0.807013
Target:  5'- -cGCGGCAGGCggccaggcacucgACGgccacGCgGCCgGCCu -3'
miRNA:   3'- aaCGUCGUCUGa------------UGCa----UGgCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 3786 0.68 0.74558
Target:  5'- -gGCGGCucauGGCcACGgcgGCCGCCgcgugCGCCa -3'
miRNA:   3'- aaCGUCGu---CUGaUGCa--UGGCGG-----GCGG- -5'
5732 5' -57.3 NC_001806.1 + 4909 0.69 0.664527
Target:  5'- -cGCGGCgAGACgGCGUccccggcguccucGCCggcgucgguGCCCGCCg -3'
miRNA:   3'- aaCGUCG-UCUGaUGCA-------------UGG---------CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 5507 0.67 0.764776
Target:  5'- -aGCAGCGGAg-----GCCGCCgGCCc -3'
miRNA:   3'- aaCGUCGUCUgaugcaUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 5888 0.74 0.411829
Target:  5'- -gGaCGGCGGGCgGCccaaggGCCGCCCGCCu -3'
miRNA:   3'- aaC-GUCGUCUGaUGca----UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 7045 0.71 0.56953
Target:  5'- -gGCGaccCAGAUguuuacuuaaaagGCGUGCCGUCCGCCg -3'
miRNA:   3'- aaCGUc--GUCUGa------------UGCAUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 14823 0.66 0.852255
Target:  5'- -cGCuaGGguGugUGCGU--CGCCCGCg -3'
miRNA:   3'- aaCG--UCguCugAUGCAugGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 19117 0.66 0.852255
Target:  5'- -gGgGGCccgGGGCUGCGUuucccggguagACCGgaCCCGCCc -3'
miRNA:   3'- aaCgUCG---UCUGAUGCA-----------UGGC--GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 20294 0.68 0.716063
Target:  5'- -gGCGGCcccgcccccuugGGGCg--GUcCCGCCCGCCg -3'
miRNA:   3'- aaCGUCG------------UCUGaugCAuGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 20341 0.8 0.176866
Target:  5'- -gGCGGCaAGGCggGCGgcccuuggGCCGCCCGCCg -3'
miRNA:   3'- aaCGUCG-UCUGa-UGCa-------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 21045 0.69 0.645091
Target:  5'- -cGUAGguGAcCUAcCGUGCuaCGUCCGCCg -3'
miRNA:   3'- aaCGUCguCU-GAU-GCAUG--GCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 21548 0.67 0.79266
Target:  5'- -cGCGGCgcguauccGGACcccACGgACCGCCUGUCg -3'
miRNA:   3'- aaCGUCG--------UCUGa--UGCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 21799 0.66 0.852255
Target:  5'- -gGCAGCccccGGGCggACGccGCC-CCCGCCc -3'
miRNA:   3'- aaCGUCG----UCUGa-UGCa-UGGcGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22632 0.66 0.844284
Target:  5'- -cGCAcCGGGCgagcGCGcGgUGCCCGCCg -3'
miRNA:   3'- aaCGUcGUCUGa---UGCaUgGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22722 0.75 0.346024
Target:  5'- -cGCGGgGGGCgACGaccccgacGCCGCCCGCCa -3'
miRNA:   3'- aaCGUCgUCUGaUGCa-------UGGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.