miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 29741 1.08 0.00219
Target:  5'- cUUGCAGCAGACUACGUACCGCCCGCCc -3'
miRNA:   3'- -AACGUCGUCUGAUGCAUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 41686 0.82 0.136967
Target:  5'- cUGUGG-GGGCgGCGUGCCGCCCGCCg -3'
miRNA:   3'- aACGUCgUCUGaUGCAUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 20341 0.8 0.176866
Target:  5'- -gGCGGCaAGGCggGCGgcccuuggGCCGCCCGCCg -3'
miRNA:   3'- aaCGUCG-UCUGa-UGCa-------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 108771 0.77 0.262126
Target:  5'- -cGCAGCAGA--GCGUGCUGUCgGCCu -3'
miRNA:   3'- aaCGUCGUCUgaUGCAUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 148116 0.76 0.287431
Target:  5'- -cGCGGCcggcugggGGGCUGCGUGagacgccCCGCCCGUCa -3'
miRNA:   3'- aaCGUCG--------UCUGAUGCAU-------GGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 100106 0.76 0.301835
Target:  5'- -cGCGGCcGGCUG---ACCGCCCGCCu -3'
miRNA:   3'- aaCGUCGuCUGAUgcaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22722 0.75 0.346024
Target:  5'- -cGCGGgGGGCgACGaccccgacGCCGCCCGCCa -3'
miRNA:   3'- aaCGUCgUCUGaUGCa-------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 24243 0.75 0.35304
Target:  5'- -cGCGGCAGcACgccuaccugGCGUgcgagcuGCUGCCCGCCg -3'
miRNA:   3'- aaCGUCGUC-UGa--------UGCA-------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 5888 0.74 0.411829
Target:  5'- -gGaCGGCGGGCgGCccaaggGCCGCCCGCCu -3'
miRNA:   3'- aaC-GUCGUCUGaUGca----UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 111244 0.73 0.447507
Target:  5'- -gGCGGCGGACaGCuuUGCCGCCUcuGCCa -3'
miRNA:   3'- aaCGUCGUCUGaUGc-AUGGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 79068 0.73 0.465978
Target:  5'- uUUGUGGCGGGCggcgaggACGUccucGCCGCCagCGCCa -3'
miRNA:   3'- -AACGUCGUCUGa------UGCA----UGGCGG--GCGG- -5'
5732 5' -57.3 NC_001806.1 + 33760 0.72 0.475361
Target:  5'- -gGCGGCGG-CUGCGgcgGCUGCggcggCCGCCg -3'
miRNA:   3'- aaCGUCGUCuGAUGCa--UGGCG-----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 136695 0.72 0.504052
Target:  5'- -gGCuGCAGACcGCGgGCCGCCacgugGCCg -3'
miRNA:   3'- aaCGuCGUCUGaUGCaUGGCGGg----CGG- -5'
5732 5' -57.3 NC_001806.1 + 110189 0.72 0.52359
Target:  5'- -aGCAcGCGGACUcguccucguGCGUGCCGCaCGCg -3'
miRNA:   3'- aaCGU-CGUCUGA---------UGCAUGGCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 107384 0.71 0.533468
Target:  5'- gUGCAGCGGGa-ACG---CGCCCGCCg -3'
miRNA:   3'- aACGUCGUCUgaUGCaugGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 2647 0.71 0.533468
Target:  5'- -aGCAGUAGGCcuccaggGCGgcgGCCGCgggcgCCGCCg -3'
miRNA:   3'- aaCGUCGUCUGa------UGCa--UGGCG-----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 129646 0.71 0.533468
Target:  5'- -aGCuccuGCAGGCUGCccugCGCCCGCCc -3'
miRNA:   3'- aaCGu---CGUCUGAUGcaugGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 99884 0.71 0.543411
Target:  5'- cUGCuGCAGAg-ACGUcACCGCCC-CCa -3'
miRNA:   3'- aACGuCGUCUgaUGCA-UGGCGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 28015 0.71 0.553415
Target:  5'- -aGCcaGGCAGACU-CGgGCCGCCC-CCu -3'
miRNA:   3'- aaCG--UCGUCUGAuGCaUGGCGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 87489 0.71 0.553415
Target:  5'- -cGCAGCAGGC-ACGUAaagacgcggauCUGCUgGCCg -3'
miRNA:   3'- aaCGUCGUCUGaUGCAU-----------GGCGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.