Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5732 | 5' | -57.3 | NC_001806.1 | + | 104349 | 0.66 | 0.852255 |
Target: 5'- -aGCGcGUAuGGCUuCGUACC-CCUGCCa -3' miRNA: 3'- aaCGU-CGU-CUGAuGCAUGGcGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 136695 | 0.72 | 0.504052 |
Target: 5'- -gGCuGCAGACcGCGgGCCGCCacgugGCCg -3' miRNA: 3'- aaCGuCGUCUGaUGCaUGGCGGg----CGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 110189 | 0.72 | 0.52359 |
Target: 5'- -aGCAcGCGGACUcguccucguGCGUGCCGCaCGCg -3' miRNA: 3'- aaCGU-CGUCUGA---------UGCAUGGCGgGCGg -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 129646 | 0.71 | 0.533468 |
Target: 5'- -aGCuccuGCAGGCUGCccugCGCCCGCCc -3' miRNA: 3'- aaCGu---CGUCUGAUGcaugGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 2647 | 0.71 | 0.533468 |
Target: 5'- -aGCAGUAGGCcuccaggGCGgcgGCCGCgggcgCCGCCg -3' miRNA: 3'- aaCGUCGUCUGa------UGCa--UGGCG-----GGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 107384 | 0.71 | 0.533468 |
Target: 5'- gUGCAGCGGGa-ACG---CGCCCGCCg -3' miRNA: 3'- aACGUCGUCUgaUGCaugGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 99884 | 0.71 | 0.543411 |
Target: 5'- cUGCuGCAGAg-ACGUcACCGCCC-CCa -3' miRNA: 3'- aACGuCGUCUgaUGCA-UGGCGGGcGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 57755 | 0.71 | 0.553415 |
Target: 5'- -aGCGGCgGGACgggccgcCGUcCCGUCCGCCg -3' miRNA: 3'- aaCGUCG-UCUGau-----GCAuGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 28015 | 0.71 | 0.553415 |
Target: 5'- -aGCcaGGCAGACU-CGgGCCGCCC-CCu -3' miRNA: 3'- aaCG--UCGUCUGAuGCaUGGCGGGcGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 33760 | 0.72 | 0.475361 |
Target: 5'- -gGCGGCGG-CUGCGgcgGCUGCggcggCCGCCg -3' miRNA: 3'- aaCGUCGUCuGAUGCa--UGGCG-----GGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 79068 | 0.73 | 0.465978 |
Target: 5'- uUUGUGGCGGGCggcgaggACGUccucGCCGCCagCGCCa -3' miRNA: 3'- -AACGUCGUCUGa------UGCA----UGGCGG--GCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 111244 | 0.73 | 0.447507 |
Target: 5'- -gGCGGCGGACaGCuuUGCCGCCUcuGCCa -3' miRNA: 3'- aaCGUCGUCUGaUGc-AUGGCGGG--CGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 41686 | 0.82 | 0.136967 |
Target: 5'- cUGUGG-GGGCgGCGUGCCGCCCGCCg -3' miRNA: 3'- aACGUCgUCUGaUGCAUGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 20341 | 0.8 | 0.176866 |
Target: 5'- -gGCGGCaAGGCggGCGgcccuuggGCCGCCCGCCg -3' miRNA: 3'- aaCGUCG-UCUGa-UGCa-------UGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 108771 | 0.77 | 0.262126 |
Target: 5'- -cGCAGCAGA--GCGUGCUGUCgGCCu -3' miRNA: 3'- aaCGUCGUCUgaUGCAUGGCGGgCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 148116 | 0.76 | 0.287431 |
Target: 5'- -cGCGGCcggcugggGGGCUGCGUGagacgccCCGCCCGUCa -3' miRNA: 3'- aaCGUCG--------UCUGAUGCAU-------GGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 100106 | 0.76 | 0.301835 |
Target: 5'- -cGCGGCcGGCUG---ACCGCCCGCCu -3' miRNA: 3'- aaCGUCGuCUGAUgcaUGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 22722 | 0.75 | 0.346024 |
Target: 5'- -cGCGGgGGGCgACGaccccgacGCCGCCCGCCa -3' miRNA: 3'- aaCGUCgUCUGaUGCa-------UGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 24243 | 0.75 | 0.35304 |
Target: 5'- -cGCGGCAGcACgccuaccugGCGUgcgagcuGCUGCCCGCCg -3' miRNA: 3'- aaCGUCGUC-UGa--------UGCA-------UGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 5888 | 0.74 | 0.411829 |
Target: 5'- -gGaCGGCGGGCgGCccaaggGCCGCCCGCCu -3' miRNA: 3'- aaC-GUCGUCUGaUGca----UGGCGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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