miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 151116 0.67 0.783499
Target:  5'- -cGCGGgGGGCUccgGCGcccccuccCCGCCCGCg -3'
miRNA:   3'- aaCGUCgUCUGA---UGCau------GGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 148116 0.76 0.287431
Target:  5'- -cGCGGCcggcugggGGGCUGCGUGagacgccCCGCCCGUCa -3'
miRNA:   3'- aaCGUCG--------UCUGAUGCAU-------GGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 148008 0.69 0.645091
Target:  5'- -cGCGGCucgcGACUgGCGggaGCCGCcgCCGCCg -3'
miRNA:   3'- aaCGUCGu---CUGA-UGCa--UGGCG--GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 147214 0.66 0.836119
Target:  5'- -gGCGGCGGAagagGCG-GCC-CCCGCg -3'
miRNA:   3'- aaCGUCGUCUga--UGCaUGGcGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 147022 0.66 0.852255
Target:  5'- ---gGGCAGGuagcGCGUgagGCCGCCCGCg -3'
miRNA:   3'- aacgUCGUCUga--UGCA---UGGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 140680 0.66 0.819239
Target:  5'- gUUGCuGCGcGGCgcccGCGUGCCGCgcuggaaCGCCc -3'
miRNA:   3'- -AACGuCGU-CUGa---UGCAUGGCGg------GCGG- -5'
5732 5' -57.3 NC_001806.1 + 138482 0.66 0.836119
Target:  5'- --aCAGcCAGAUcGCGgugACCGCgCGCCu -3'
miRNA:   3'- aacGUC-GUCUGaUGCa--UGGCGgGCGG- -5'
5732 5' -57.3 NC_001806.1 + 137958 0.69 0.645091
Target:  5'- cUGCAaccGCAcGCUGCGcgaguaCGCCCGCCu -3'
miRNA:   3'- aACGU---CGUcUGAUGCaug---GCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 137900 0.7 0.593907
Target:  5'- -aGCAcCAGAaaCUGCGguguuCCGUCCGCCa -3'
miRNA:   3'- aaCGUcGUCU--GAUGCau---GGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 136695 0.72 0.504052
Target:  5'- -gGCuGCAGACcGCGgGCCGCCacgugGCCg -3'
miRNA:   3'- aaCGuCGUCUGaUGCaUGGCGGg----CGG- -5'
5732 5' -57.3 NC_001806.1 + 135118 0.69 0.665549
Target:  5'- -gGgGGCAGcGCUGCGUGCuggaCGUCCGCg -3'
miRNA:   3'- aaCgUCGUC-UGAUGCAUG----GCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 133066 0.69 0.655329
Target:  5'- cUGCGGCAGcucCUGgGUgggguaauggccGCCGUCUGCCu -3'
miRNA:   3'- aACGUCGUCu--GAUgCA------------UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 129646 0.71 0.533468
Target:  5'- -aGCuccuGCAGGCUGCccugCGCCCGCCc -3'
miRNA:   3'- aaCGu---CGUCUGAUGcaugGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 128520 0.68 0.716063
Target:  5'- gUGCGGCAuGGCcaUGCGgGCCGCa-GCCa -3'
miRNA:   3'- aACGUCGU-CUG--AUGCaUGGCGggCGG- -5'
5732 5' -57.3 NC_001806.1 + 126756 0.68 0.735829
Target:  5'- cUUGguGCAgGGCUACGUGCuCGacaGCCa -3'
miRNA:   3'- -AACguCGU-CUGAUGCAUG-GCgggCGG- -5'
5732 5' -57.3 NC_001806.1 + 125860 0.69 0.685897
Target:  5'- -cGCcGCGGACgcCGUGgCGCCCcgGCCc -3'
miRNA:   3'- aaCGuCGUCUGauGCAUgGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 124494 0.67 0.814039
Target:  5'- cUGCGGuCGGACgccgucucgcuccgGCGgGCCGuCCuCGCCg -3'
miRNA:   3'- aACGUC-GUCUGa-------------UGCaUGGC-GG-GCGG- -5'
5732 5' -57.3 NC_001806.1 + 123926 0.69 0.685897
Target:  5'- -gGCGGCcaaACUGa--ACCGCCCGCCc -3'
miRNA:   3'- aaCGUCGuc-UGAUgcaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 122851 0.66 0.827768
Target:  5'- -gGCAcCAGGCUAUuaaacagcaGCCGCCgCGCCa -3'
miRNA:   3'- aaCGUcGUCUGAUGca-------UGGCGG-GCGG- -5'
5732 5' -57.3 NC_001806.1 + 119865 0.69 0.685897
Target:  5'- gUGgGGCGGGCgACG---CGCCCGCCc -3'
miRNA:   3'- aACgUCGUCUGaUGCaugGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.