Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5732 | 5' | -57.3 | NC_001806.1 | + | 89894 | 0.68 | 0.725986 |
Target: 5'- -cGCAG-GGACcccGCGuUGCCGgCCGCCg -3' miRNA: 3'- aaCGUCgUCUGa--UGC-AUGGCgGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 103788 | 0.68 | 0.725986 |
Target: 5'- cUGCuGCAGACcccCGgGCgGCgCCGCCg -3' miRNA: 3'- aACGuCGUCUGau-GCaUGgCG-GGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 36538 | 0.68 | 0.725986 |
Target: 5'- -aGCAGUGGAU--UGUGCCGCUgGUCu -3' miRNA: 3'- aaCGUCGUCUGauGCAUGGCGGgCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 128520 | 0.68 | 0.716063 |
Target: 5'- gUGCGGCAuGGCcaUGCGgGCCGCa-GCCa -3' miRNA: 3'- aACGUCGU-CUG--AUGCaUGGCGggCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 64201 | 0.68 | 0.716063 |
Target: 5'- cUGgaAGaCGGACUccAUGUAgUGCCCGCCa -3' miRNA: 3'- aACg-UC-GUCUGA--UGCAUgGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 20294 | 0.68 | 0.716063 |
Target: 5'- -gGCGGCcccgcccccuugGGGCg--GUcCCGCCCGCCg -3' miRNA: 3'- aaCGUCG------------UCUGaugCAuGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 50060 | 0.68 | 0.706067 |
Target: 5'- -gGCGGCAGuucgcgagccucACgGCGUugCGuCCCGUCg -3' miRNA: 3'- aaCGUCGUC------------UGaUGCAugGC-GGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 69291 | 0.68 | 0.706067 |
Target: 5'- cUGCAGCAGACguggACGUugauccagaauACCaauucGCCCuCCg -3' miRNA: 3'- aACGUCGUCUGa---UGCA-----------UGG-----CGGGcGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 26942 | 0.68 | 0.706067 |
Target: 5'- cUGguGUcuGGGCcuCG-GCCGCCCGCCu -3' miRNA: 3'- aACguCG--UCUGauGCaUGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 74648 | 0.69 | 0.696009 |
Target: 5'- cUGCGGCAGGC-GCGggccauggaUGCCGCCaaGCUg -3' miRNA: 3'- aACGUCGUCUGaUGC---------AUGGCGGg-CGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 119479 | 0.69 | 0.696009 |
Target: 5'- -aGC-GCGGACcggGCGUGCgGCCUGUg -3' miRNA: 3'- aaCGuCGUCUGa--UGCAUGgCGGGCGg -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 39939 | 0.69 | 0.693991 |
Target: 5'- gUGCAGCGGACUGgcaccgaagacggUGUACCacacgagcacgagGCCguaCGCCg -3' miRNA: 3'- aACGUCGUCUGAU-------------GCAUGG-------------CGG---GCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 123926 | 0.69 | 0.685897 |
Target: 5'- -gGCGGCcaaACUGa--ACCGCCCGCCc -3' miRNA: 3'- aaCGUCGuc-UGAUgcaUGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 119865 | 0.69 | 0.685897 |
Target: 5'- gUGgGGCGGGCgACG---CGCCCGCCc -3' miRNA: 3'- aACgUCGUCUGaUGCaugGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 125860 | 0.69 | 0.685897 |
Target: 5'- -cGCcGCGGACgcCGUGgCGCCCcgGCCc -3' miRNA: 3'- aaCGuCGUCUGauGCAUgGCGGG--CGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 105318 | 0.69 | 0.675741 |
Target: 5'- aUGCAuGUcuuuauccuGGAUUACGaccaAUCGCCCGCCg -3' miRNA: 3'- aACGU-CG---------UCUGAUGCa---UGGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 42789 | 0.69 | 0.675741 |
Target: 5'- cUGUAGCGcGGCgACGUcguCCGCUCGCUc -3' miRNA: 3'- aACGUCGU-CUGaUGCAu--GGCGGGCGG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 135118 | 0.69 | 0.665549 |
Target: 5'- -gGgGGCAGcGCUGCGUGCuggaCGUCCGCg -3' miRNA: 3'- aaCgUCGUC-UGAUGCAUG----GCGGGCGg -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 96124 | 0.69 | 0.665549 |
Target: 5'- gUUGCGccGCccGGACUGCa-GCCGCCCGaCCu -3' miRNA: 3'- -AACGU--CG--UCUGAUGcaUGGCGGGC-GG- -5' |
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5732 | 5' | -57.3 | NC_001806.1 | + | 4909 | 0.69 | 0.664527 |
Target: 5'- -cGCGGCgAGACgGCGUccccggcguccucGCCggcgucgguGCCCGCCg -3' miRNA: 3'- aaCGUCG-UCUGaUGCA-------------UGG---------CGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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