miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5736 3' -56.4 NC_001806.1 + 2684 0.69 0.717864
Target:  5'- cGUGUG-GCuGGGccCCGGGGGCuGCCGc -3'
miRNA:   3'- aUAUAUaUGuCCCu-GGCCCCCG-CGGU- -5'
5736 3' -56.4 NC_001806.1 + 2786 0.66 0.854516
Target:  5'- ------cGCGGcGGCCcGGGGCGCCGc -3'
miRNA:   3'- auauauaUGUCcCUGGcCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 2813 0.68 0.785628
Target:  5'- ------gGCGGGGGcgggcucgggccCCGGGGGCGUgGa -3'
miRNA:   3'- auauauaUGUCCCU------------GGCCCCCGCGgU- -5'
5736 3' -56.4 NC_001806.1 + 2872 0.67 0.846544
Target:  5'- ------cGCGGGcGuccgaGCCGGGGGCGuCCGc -3'
miRNA:   3'- auauauaUGUCC-C-----UGGCCCCCGC-GGU- -5'
5736 3' -56.4 NC_001806.1 + 4181 0.66 0.854516
Target:  5'- -------cCGGGGGCgGGGGcccgGCGCCGg -3'
miRNA:   3'- auauauauGUCCCUGgCCCC----CGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 4438 0.71 0.625787
Target:  5'- ------gGCGGGGGcggcguccgcCCGGGGGCuGCCGg -3'
miRNA:   3'- auauauaUGUCCCU----------GGCCCCCG-CGGU- -5'
5736 3' -56.4 NC_001806.1 + 4660 0.66 0.862283
Target:  5'- ------gGCGGcuGGGCCGGcGGGCGCg- -3'
miRNA:   3'- auauauaUGUC--CCUGGCC-CCCGCGgu -5'
5736 3' -56.4 NC_001806.1 + 6776 0.66 0.877177
Target:  5'- ------gGCGuGaGGACCGGGaGGCgGCCAg -3'
miRNA:   3'- auauauaUGU-C-CCUGGCCC-CCG-CGGU- -5'
5736 3' -56.4 NC_001806.1 + 9133 0.68 0.757242
Target:  5'- ------aACAGGGA--GGGGGCGUCGa -3'
miRNA:   3'- auauauaUGUCCCUggCCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 9511 0.71 0.593849
Target:  5'- ----gGUGgAGGGAgagucgggucucuCCGGGGGgGCCAg -3'
miRNA:   3'- auauaUAUgUCCCU-------------GGCCCCCgCGGU- -5'
5736 3' -56.4 NC_001806.1 + 9755 0.66 0.883592
Target:  5'- ------cGCAGGGcGCCguggguuGGGGGCGCg- -3'
miRNA:   3'- auauauaUGUCCC-UGG-------CCCCCGCGgu -5'
5736 3' -56.4 NC_001806.1 + 10692 0.69 0.707809
Target:  5'- ------cGCAgauGGGGCCGGGGGggcguaCGCCAu -3'
miRNA:   3'- auauauaUGU---CCCUGGCCCCC------GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 15858 0.67 0.838374
Target:  5'- ---------uGGGGCCGcGGGGgGCCGa -3'
miRNA:   3'- auauauauguCCCUGGC-CCCCgCGGU- -5'
5736 3' -56.4 NC_001806.1 + 15946 0.7 0.67729
Target:  5'- --gGUAUACGGauccccggccaGGACuCGGGGGCGUUg -3'
miRNA:   3'- auaUAUAUGUC-----------CCUG-GCCCCCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 16851 0.67 0.820606
Target:  5'- gGUGUGggaagguUugGGGGucuCCGGGGGCGgggaguCCAg -3'
miRNA:   3'- aUAUAU-------AugUCCCu--GGCCCCCGC------GGU- -5'
5736 3' -56.4 NC_001806.1 + 19529 0.67 0.838374
Target:  5'- ------gGCGGGGAUCGGagagcGGGaCGCCGc -3'
miRNA:   3'- auauauaUGUCCCUGGCC-----CCC-GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 20400 0.69 0.707809
Target:  5'- ------gGC-GGGACCGGGGG-GCCc -3'
miRNA:   3'- auauauaUGuCCCUGGCCCCCgCGGu -5'
5736 3' -56.4 NC_001806.1 + 20619 0.68 0.747542
Target:  5'- gAUGg--GCGGGG-CCGGGGGUucgaccaacggGCCGc -3'
miRNA:   3'- aUAUauaUGUCCCuGGCCCCCG-----------CGGU- -5'
5736 3' -56.4 NC_001806.1 + 22045 0.66 0.854516
Target:  5'- ------aGCGGGGAgCCGuGGcccGGCGCCGg -3'
miRNA:   3'- auauauaUGUCCCU-GGC-CC---CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 22566 0.7 0.67729
Target:  5'- ------gACGGGGGCCGcGGGGaGCCc -3'
miRNA:   3'- auauauaUGUCCCUGGC-CCCCgCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.