miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5736 3' -56.4 NC_001806.1 + 64561 0.66 0.887076
Target:  5'- cAUGUAUGCGuucggcGGGACCGGaGgaacguccagacacaGGCGCUg -3'
miRNA:   3'- aUAUAUAUGU------CCCUGGCC-C---------------CCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 95294 0.71 0.574395
Target:  5'- ------cAUGGGGGCgGGGGGCGCg- -3'
miRNA:   3'- auauauaUGUCCCUGgCCCCCGCGgu -5'
5736 3' -56.4 NC_001806.1 + 28523 0.71 0.584619
Target:  5'- ------cGCAGGGcCCGGGGuCGCCGu -3'
miRNA:   3'- auauauaUGUCCCuGGCCCCcGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 33976 0.71 0.584619
Target:  5'- ----cGUGC-GGG-CCGGGGGuCGCCGg -3'
miRNA:   3'- auauaUAUGuCCCuGGCCCCC-GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 45335 0.71 0.584619
Target:  5'- ------cGCGauGGGAUCGGGGGCGCgCGg -3'
miRNA:   3'- auauauaUGU--CCCUGGCCCCCGCG-GU- -5'
5736 3' -56.4 NC_001806.1 + 9511 0.71 0.593849
Target:  5'- ----gGUGgAGGGAgagucgggucucuCCGGGGGgGCCAg -3'
miRNA:   3'- auauaUAUgUCCCU-------------GGCCCCCgCGGU- -5'
5736 3' -56.4 NC_001806.1 + 151542 0.71 0.594876
Target:  5'- cGUGggccCGGGcGGCCGGGGGCGgCGg -3'
miRNA:   3'- aUAUauauGUCC-CUGGCCCCCGCgGU- -5'
5736 3' -56.4 NC_001806.1 + 145235 0.71 0.594876
Target:  5'- aAUAgaggGgGGGGACCcaaacgacaGGGGGCGCCc -3'
miRNA:   3'- aUAUaua-UgUCCCUGG---------CCCCCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 85991 0.71 0.615468
Target:  5'- --gGUcgGCAGGcGAcggcgucucCCGGGGGCGCUu -3'
miRNA:   3'- auaUAuaUGUCC-CU---------GGCCCCCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 100397 0.72 0.524033
Target:  5'- ------cGCGGGGGCCGGGGuGC-CCGa -3'
miRNA:   3'- auauauaUGUCCCUGGCCCC-CGcGGU- -5'
5736 3' -56.4 NC_001806.1 + 23943 0.72 0.524033
Target:  5'- ------gGCGGGGcCUGGGGGgGCCGc -3'
miRNA:   3'- auauauaUGUCCCuGGCCCCCgCGGU- -5'
5736 3' -56.4 NC_001806.1 + 26831 0.73 0.514153
Target:  5'- ------gGCGGGGA--GGGGGCGCCGg -3'
miRNA:   3'- auauauaUGUCCCUggCCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 28418 0.9 0.042678
Target:  5'- cUAUAUAUACAGGGACCGGGGuCGCCc -3'
miRNA:   3'- -AUAUAUAUGUCCCUGGCCCCcGCGGu -5'
5736 3' -56.4 NC_001806.1 + 31711 0.77 0.293892
Target:  5'- aGUGgggGUGCGuGGGAgUGGGGGUGCCAu -3'
miRNA:   3'- aUAUa--UAUGU-CCCUgGCCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 28211 0.76 0.337547
Target:  5'- --cAUAUugGGGGGCgccauauugGGGGGCGCCAu -3'
miRNA:   3'- auaUAUAugUCCCUGg--------CCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 66568 0.76 0.337547
Target:  5'- ---------uGGGGCCGGGGGCGUCAu -3'
miRNA:   3'- auauauauguCCCUGGCCCCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 139822 0.76 0.353111
Target:  5'- ----gGUACGGGG-CCGGGaGCGCCAg -3'
miRNA:   3'- auauaUAUGUCCCuGGCCCcCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 86735 0.75 0.402775
Target:  5'- ------aAUAGGGcCCGGGGGCGCgCAu -3'
miRNA:   3'- auauauaUGUCCCuGGCCCCCGCG-GU- -5'
5736 3' -56.4 NC_001806.1 + 29019 0.75 0.411474
Target:  5'- ----aGUGgGGGGGCgGGGGGaCGCCGa -3'
miRNA:   3'- auauaUAUgUCCCUGgCCCCC-GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 23793 0.74 0.456646
Target:  5'- ------cACGGGGccGCCGGGGGcCGCCu -3'
miRNA:   3'- auauauaUGUCCC--UGGCCCCC-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.