Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5736 | 5' | -52.7 | NC_001806.1 | + | 17085 | 0.66 | 0.966567 |
Target: 5'- aGCGGcAguuugacgacccACCCCCUGACCUa------- -3' miRNA: 3'- aCGCC-U------------UGGGGGACUGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 17859 | 0.66 | 0.972673 |
Target: 5'- cGCGGcccccaaccACCCCCUggaGACCCUGc----- -3' miRNA: 3'- aCGCCu--------UGGGGGA---CUGGGAUauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 23554 | 0.71 | 0.78994 |
Target: 5'- gGCGGcAGCCCCCggGGCCCa------- -3' miRNA: 3'- aCGCC-UUGGGGGa-CUGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 26844 | 0.68 | 0.932682 |
Target: 5'- cGcCGGAGCCCCCcgcGACCCc------- -3' miRNA: 3'- aC-GCCUUGGGGGa--CUGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 28245 | 0.72 | 0.760952 |
Target: 5'- uUGgGGGACCCCC-GACCCUu------ -3' miRNA: 3'- -ACgCCUUGGGGGaCUGGGAuauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 28347 | 0.81 | 0.29426 |
Target: 5'- cGUGGAACCCCgUGACaCUAUAUAUAc -3' miRNA: 3'- aCGCCUUGGGGgACUGgGAUAUAUAU- -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 28400 | 1.07 | 0.006888 |
Target: 5'- gUGCGGAACCCCCUGACCCUAUAUAUAc -3' miRNA: 3'- -ACGCCUUGGGGGACUGGGAUAUAUAU- -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 28447 | 0.77 | 0.491522 |
Target: 5'- uUGgGGGucgccaugugACCCCCUGACUUUAUAUAUAc -3' miRNA: 3'- -ACgCCU----------UGGGGGACUGGGAUAUAUAU- -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 28541 | 0.79 | 0.397671 |
Target: 5'- cGUGGGACCCCCUGACUCa------- -3' miRNA: 3'- aCGCCUUGGGGGACUGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 28708 | 0.68 | 0.927317 |
Target: 5'- cGUGGGACCCCC-GACUCcgGUGc--- -3' miRNA: 3'- aCGCCUUGGGGGaCUGGGa-UAUauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 29504 | 0.68 | 0.92112 |
Target: 5'- aGCGGuucGCCCcgcgguaCCUGACCCUGg----- -3' miRNA: 3'- aCGCCu--UGGG-------GGACUGGGAUauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 38708 | 0.68 | 0.927317 |
Target: 5'- gGCGGGGCCCCCgc-CCCa------- -3' miRNA: 3'- aCGCCUUGGGGGacuGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 52736 | 0.66 | 0.96973 |
Target: 5'- cGCGGGGCCCCCgcuUCCgg-AUGc- -3' miRNA: 3'- aCGCCUUGGGGGacuGGGauaUAUau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 56814 | 0.68 | 0.932682 |
Target: 5'- gGCGGuggucGCCCCCgGGCCCg------- -3' miRNA: 3'- aCGCCu----UGGGGGaCUGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 63728 | 0.67 | 0.955297 |
Target: 5'- gGCGaGGACCCCCUucauccggagcacGGCCCgcacgucgGUGUGc -3' miRNA: 3'- aCGC-CUUGGGGGA-------------CUGGGaua-----UAUAU- -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 81450 | 0.68 | 0.919959 |
Target: 5'- cGCGGAgaaacucccgcacgGCCCCUUGgguGCCCUGgggGUGc- -3' miRNA: 3'- aCGCCU--------------UGGGGGAC---UGGGAUa--UAUau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 81874 | 0.68 | 0.927317 |
Target: 5'- aGCGGGccaaaaccgucCCCCCUGGCCCg------- -3' miRNA: 3'- aCGCCUu----------GGGGGACUGGGauauauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 83293 | 0.72 | 0.767824 |
Target: 5'- cGCGGAggaccccgcaacccGCCCCCgGAuCCCUGUGg--- -3' miRNA: 3'- aCGCCU--------------UGGGGGaCU-GGGAUAUauau -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 84777 | 0.66 | 0.966567 |
Target: 5'- -cUGGAGCacaCCCUGuguaCCUAUGUAUGa -3' miRNA: 3'- acGCCUUGg--GGGACug--GGAUAUAUAU- -5' |
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5736 | 5' | -52.7 | NC_001806.1 | + | 91071 | 0.68 | 0.915818 |
Target: 5'- gGcCGGAgacGCCgCCCUGGCCCUcgAg--- -3' miRNA: 3'- aC-GCCU---UGG-GGGACUGGGAuaUauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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