miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5736 5' -52.7 NC_001806.1 + 98764 0.66 0.972673
Target:  5'- aUGCGGcugcagagcAACCCCaugaaGGCCCUGUAc--- -3'
miRNA:   3'- -ACGCC---------UUGGGGga---CUGGGAUAUauau -5'
5736 5' -52.7 NC_001806.1 + 109082 0.7 0.835077
Target:  5'- cGCGGGGCCCCCgcgGAgCCa------- -3'
miRNA:   3'- aCGCCUUGGGGGa--CUgGGauauauau -5'
5736 5' -52.7 NC_001806.1 + 121831 0.68 0.914005
Target:  5'- cGCGGAcaacauCCCCCcgaccagcgccgggUGGCgCCUGUGUGUc -3'
miRNA:   3'- aCGCCUu-----GGGGG--------------ACUG-GGAUAUAUAu -5'
5736 5' -52.7 NC_001806.1 + 91071 0.68 0.915818
Target:  5'- gGcCGGAgacGCCgCCCUGGCCCUcgAg--- -3'
miRNA:   3'- aC-GCCU---UGG-GGGACUGGGAuaUauau -5'
5736 5' -52.7 NC_001806.1 + 81450 0.68 0.919959
Target:  5'- cGCGGAgaaacucccgcacgGCCCCUUGgguGCCCUGgggGUGc- -3'
miRNA:   3'- aCGCCU--------------UGGGGGAC---UGGGAUa--UAUau -5'
5736 5' -52.7 NC_001806.1 + 29504 0.68 0.92112
Target:  5'- aGCGGuucGCCCcgcgguaCCUGACCCUGg----- -3'
miRNA:   3'- aCGCCu--UGGG-------GGACUGGGAUauauau -5'
5736 5' -52.7 NC_001806.1 + 38708 0.68 0.927317
Target:  5'- gGCGGGGCCCCCgc-CCCa------- -3'
miRNA:   3'- aCGCCUUGGGGGacuGGGauauauau -5'
5736 5' -52.7 NC_001806.1 + 81874 0.68 0.927317
Target:  5'- aGCGGGccaaaaccgucCCCCCUGGCCCg------- -3'
miRNA:   3'- aCGCCUu----------GGGGGACUGGGauauauau -5'
5736 5' -52.7 NC_001806.1 + 28708 0.68 0.927317
Target:  5'- cGUGGGACCCCC-GACUCcgGUGc--- -3'
miRNA:   3'- aCGCCUUGGGGGaCUGGGa-UAUauau -5'
5736 5' -52.7 NC_001806.1 + 118751 0.71 0.799311
Target:  5'- cGCgGGAAUCCCCUGgccGCCCUGa----- -3'
miRNA:   3'- aCG-CCUUGGGGGAC---UGGGAUauauau -5'
5736 5' -52.7 NC_001806.1 + 107402 0.71 0.799311
Target:  5'- cGcCGGAGCCUUCUGauagccucgGCCCUGUGUAc- -3'
miRNA:   3'- aC-GCCUUGGGGGAC---------UGGGAUAUAUau -5'
5736 5' -52.7 NC_001806.1 + 23554 0.71 0.78994
Target:  5'- gGCGGcAGCCCCCggGGCCCa------- -3'
miRNA:   3'- aCGCC-UUGGGGGa-CUGGGauauauau -5'
5736 5' -52.7 NC_001806.1 + 28347 0.81 0.29426
Target:  5'- cGUGGAACCCCgUGACaCUAUAUAUAc -3'
miRNA:   3'- aCGCCUUGGGGgACUGgGAUAUAUAU- -5'
5736 5' -52.7 NC_001806.1 + 136816 0.79 0.388932
Target:  5'- -cCGGAcgacguuguacACCCCCUGGCCCUcgGUAUAc -3'
miRNA:   3'- acGCCU-----------UGGGGGACUGGGAuaUAUAU- -5'
5736 5' -52.7 NC_001806.1 + 28541 0.79 0.397671
Target:  5'- cGUGGGACCCCCUGACUCa------- -3'
miRNA:   3'- aCGCCUUGGGGGACUGGGauauauau -5'
5736 5' -52.7 NC_001806.1 + 28447 0.77 0.491522
Target:  5'- uUGgGGGucgccaugugACCCCCUGACUUUAUAUAUAc -3'
miRNA:   3'- -ACgCCU----------UGGGGGACUGGGAUAUAUAU- -5'
5736 5' -52.7 NC_001806.1 + 149585 0.72 0.740997
Target:  5'- -aUGGcGCCCCCgGuCCCUGUAUAUAu -3'
miRNA:   3'- acGCCuUGGGGGaCuGGGAUAUAUAU- -5'
5736 5' -52.7 NC_001806.1 + 121239 0.72 0.75103
Target:  5'- aGCGuGAcgcACCCCCUGACCCc------- -3'
miRNA:   3'- aCGC-CU---UGGGGGACUGGGauauauau -5'
5736 5' -52.7 NC_001806.1 + 28245 0.72 0.760952
Target:  5'- uUGgGGGACCCCC-GACCCUu------ -3'
miRNA:   3'- -ACgCCUUGGGGGaCUGGGAuauauau -5'
5736 5' -52.7 NC_001806.1 + 83293 0.72 0.767824
Target:  5'- cGCGGAggaccccgcaacccGCCCCCgGAuCCCUGUGg--- -3'
miRNA:   3'- aCGCCU--------------UGGGGGaCU-GGGAUAUauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.