miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5737 5' -58.7 NC_001806.1 + 1664 0.71 0.522509
Target:  5'- cCUCcucGCAgaagucCGGcGcGCCGGGCGCCAUGg -3'
miRNA:   3'- -GAGua-UGU------GCC-CuCGGCCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 2839 0.67 0.71166
Target:  5'- -gCGUGgAgGGGGGCgCGGGCGCgGg- -3'
miRNA:   3'- gaGUAUgUgCCCUCG-GCCCGCGgUac -5'
5737 5' -58.7 NC_001806.1 + 3339 0.67 0.740778
Target:  5'- cCUCcgGcCGCGGGgggcuggcgGGCCGGGCcccgGCCAg- -3'
miRNA:   3'- -GAGuaU-GUGCCC---------UCGGCCCG----CGGUac -5'
5737 5' -58.7 NC_001806.1 + 3529 0.66 0.778276
Target:  5'- gUCGUcgccccccGCGgGGGAGgCGGGCGCgGc- -3'
miRNA:   3'- gAGUA--------UGUgCCCUCgGCCCGCGgUac -5'
5737 5' -58.7 NC_001806.1 + 4184 0.7 0.591542
Target:  5'- ----gGgGCGGGGGCCcGGCGCCGg- -3'
miRNA:   3'- gaguaUgUGCCCUCGGcCCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 4944 0.66 0.812891
Target:  5'- gUCGgugcccgcCGCGGGGgcccucccgucccGCCGGGCGUCGUc -3'
miRNA:   3'- gAGUau------GUGCCCU-------------CGGCCCGCGGUAc -5'
5737 5' -58.7 NC_001806.1 + 12978 0.67 0.759746
Target:  5'- uCUCGgACAgcucCGGGGGCagcaGGGUGCuCGUGu -3'
miRNA:   3'- -GAGUaUGU----GCCCUCGg---CCCGCG-GUAC- -5'
5737 5' -58.7 NC_001806.1 + 14047 0.66 0.7963
Target:  5'- aUCuuUAUugGGG-GCCGGG-GCCAc- -3'
miRNA:   3'- gAGu-AUGugCCCuCGGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 18310 0.67 0.71166
Target:  5'- -aCAUACAaGGGGGUCgGGGCGaCCGg- -3'
miRNA:   3'- gaGUAUGUgCCCUCGG-CCCGC-GGUac -5'
5737 5' -58.7 NC_001806.1 + 23792 0.67 0.740778
Target:  5'- -----cCACGGGGccGCCGGGgGCCGc- -3'
miRNA:   3'- gaguauGUGCCCU--CGGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 24115 0.71 0.532207
Target:  5'- ----cACGCGGGAccuggccuucGCCGGG-GCCGUGg -3'
miRNA:   3'- gaguaUGUGCCCU----------CGGCCCgCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 24864 0.68 0.681951
Target:  5'- -cCGUGCugGcGGcGgCGGGgGCCGUGg -3'
miRNA:   3'- gaGUAUGugC-CCuCgGCCCgCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28173 0.79 0.189256
Target:  5'- ----aGCGCGaggugaGGGGCCGGGCGCCAUGu -3'
miRNA:   3'- gaguaUGUGC------CCUCGGCCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28210 0.75 0.297396
Target:  5'- -cCAUAUugGGGGGCgCcauauugggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGugCCCUCG-G---------CCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28299 1.08 0.001889
Target:  5'- aCUCAUACACGGGAGCCGGGCGCCAUGu -3'
miRNA:   3'- -GAGUAUGUGCCCUCGGCCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28366 0.69 0.641821
Target:  5'- -aUAUAUACaGGGA-CCggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGUG-CCCUcGG--CCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28516 0.68 0.661933
Target:  5'- aCUCAgACGCaGGGcCCGGGguCGCCGUGg -3'
miRNA:   3'- -GAGUaUGUGcCCUcGGCCC--GCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 30410 0.67 0.721443
Target:  5'- -gCGgcuCGgGGGGGCCGGGCGUgGa- -3'
miRNA:   3'- gaGUau-GUgCCCUCGGCCCGCGgUac -5'
5737 5' -58.7 NC_001806.1 + 31373 0.66 0.7963
Target:  5'- ----gAgGgGGGGGUCGGGCGCUggGUGg -3'
miRNA:   3'- gaguaUgUgCCCUCGGCCCGCGG--UAC- -5'
5737 5' -58.7 NC_001806.1 + 31717 0.7 0.561662
Target:  5'- --gGUGCGUGGGAGUgGgGGUGCCAUGu -3'
miRNA:   3'- gagUAUGUGCCCUCGgC-CCGCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.