miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5737 5' -58.7 NC_001806.1 + 4944 0.66 0.812891
Target:  5'- gUCGgugcccgcCGCGGGGgcccucccgucccGCCGGGCGUCGUc -3'
miRNA:   3'- gAGUau------GUGCCCU-------------CGGCCCGCGGUAc -5'
5737 5' -58.7 NC_001806.1 + 146848 0.69 0.610611
Target:  5'- gCUCcaGC-CGGGgaccgcggcccgcAGCCGGGuCGCCAUGu -3'
miRNA:   3'- -GAGuaUGuGCCC-------------UCGGCCC-GCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 130435 0.69 0.611616
Target:  5'- cCUCAggGCccagcgcgaucuACGGGAGCUGcGGUGCCGg- -3'
miRNA:   3'- -GAGUa-UG------------UGCCCUCGGC-CCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 71605 0.69 0.640814
Target:  5'- aCUCGUAgccuaauCAgGGGAaCCGGG-GCCAUGg -3'
miRNA:   3'- -GAGUAU-------GUgCCCUcGGCCCgCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 146772 0.69 0.641821
Target:  5'- aCUCcgACGCGGGGGCCgucGGGUaCUcgGg -3'
miRNA:   3'- -GAGuaUGUGCCCUCGG---CCCGcGGuaC- -5'
5737 5' -58.7 NC_001806.1 + 28366 0.69 0.641821
Target:  5'- -aUAUAUACaGGGA-CCggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGUG-CCCUcGG--CCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 62926 0.69 0.641821
Target:  5'- cCUCGUAC-CGcG-GCCGGGCGUCcgGa -3'
miRNA:   3'- -GAGUAUGuGCcCuCGGCCCGCGGuaC- -5'
5737 5' -58.7 NC_001806.1 + 28516 0.68 0.661933
Target:  5'- aCUCAgACGCaGGGcCCGGGguCGCCGUGg -3'
miRNA:   3'- -GAGUaUGUGcCCUcGGCCC--GCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 100490 0.68 0.671958
Target:  5'- gUCAcccugcgGCGCGGcagcgaucGAGCCGGGCGgUAUGu -3'
miRNA:   3'- gAGUa------UGUGCC--------CUCGGCCCGCgGUAC- -5'
5737 5' -58.7 NC_001806.1 + 4184 0.7 0.591542
Target:  5'- ----gGgGCGGGGGCCcGGCGCCGg- -3'
miRNA:   3'- gaguaUgUGCCCUCGGcCCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 31717 0.7 0.561662
Target:  5'- --gGUGCGUGGGAGUgGgGGUGCCAUGu -3'
miRNA:   3'- gagUAUGUGCCCUCGgC-CCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 24115 0.71 0.532207
Target:  5'- ----cACGCGGGAccuggccuucGCCGGG-GCCGUGg -3'
miRNA:   3'- gaguaUGUGCCCU----------CGGCCCgCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 111538 0.8 0.159041
Target:  5'- -aCGUACACGGGuGGCCGGGCGUUgggGUGg -3'
miRNA:   3'- gaGUAUGUGCCC-UCGGCCCGCGG---UAC- -5'
5737 5' -58.7 NC_001806.1 + 28173 0.79 0.189256
Target:  5'- ----aGCGCGaggugaGGGGCCGGGCGCCAUGu -3'
miRNA:   3'- gaguaUGUGC------CCUCGGCCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28210 0.75 0.297396
Target:  5'- -cCAUAUugGGGGGCgCcauauugggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGugCCCUCG-G---------CCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 68088 0.75 0.311217
Target:  5'- -cCAccCACGcGAGCCGGGCGUCAUGg -3'
miRNA:   3'- gaGUauGUGCcCUCGGCCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 41823 0.74 0.355571
Target:  5'- --aAUACGCGGGGG-CGGGCGUCAg- -3'
miRNA:   3'- gagUAUGUGCCCUCgGCCCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 100395 0.74 0.363383
Target:  5'- ----gGCGCGGGGGCCgGGGUGCCcgAUGu -3'
miRNA:   3'- gaguaUGUGCCCUCGG-CCCGCGG--UAC- -5'
5737 5' -58.7 NC_001806.1 + 95945 0.72 0.46593
Target:  5'- uUCAU-CAUGGGGGCgGGGgGCUcgGg -3'
miRNA:   3'- gAGUAuGUGCCCUCGgCCCgCGGuaC- -5'
5737 5' -58.7 NC_001806.1 + 1664 0.71 0.522509
Target:  5'- cCUCcucGCAgaagucCGGcGcGCCGGGCGCCAUGg -3'
miRNA:   3'- -GAGua-UGU------GCC-CuCGGCCCGCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.