miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 56652 0.67 0.826111
Target:  5'- aUCGGC-CGGcGGCCCGUgggaucguuggggGGUCGGGGGg -3'
miRNA:   3'- gGGUUGaGCC-UUGGGCG-------------CCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 57663 0.67 0.830228
Target:  5'- cCCCGgaaggcggagaaggcGC-CGGGGCuuGCuucuccGGUCGGGAGg -3'
miRNA:   3'- -GGGU---------------UGaGCCUUGggCG------CCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 64953 0.7 0.668636
Target:  5'- aCCGGCgUCGGcGCCCG-GGcCGGGGGu -3'
miRNA:   3'- gGGUUG-AGCCuUGGGCgCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 65699 0.79 0.246768
Target:  5'- cCCCAAC-CGGGGCCCGCGcuucgaCGGGAGa -3'
miRNA:   3'- -GGGUUGaGCCUUGGGCGCca----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 72372 0.68 0.81009
Target:  5'- gUCgGGCcCGGAACCCGCGGcUCcugcGGAc -3'
miRNA:   3'- -GGgUUGaGCCUUGGGCGCC-AGu---CCUc -5'
5738 5' -57.2 NC_001806.1 + 75499 0.66 0.882971
Target:  5'- aCCGGCgcgCGGGaaaGCCuCGCGGgccacgagggcagguUCGGGGGc -3'
miRNA:   3'- gGGUUGa--GCCU---UGG-GCGCC---------------AGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 81611 0.69 0.737176
Target:  5'- gCCA--UCGGGACCgGaGGUCGGGAa -3'
miRNA:   3'- gGGUugAGCCUUGGgCgCCAGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 84422 0.68 0.81009
Target:  5'- cCCCGAgaCGcAGCCCGgGGaCGGGGGc -3'
miRNA:   3'- -GGGUUgaGCcUUGGGCgCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 85726 0.7 0.708155
Target:  5'- aCCCAccGCcCcGAACCCuGCGGUCcGGAGc -3'
miRNA:   3'- -GGGU--UGaGcCUUGGG-CGCCAGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 85942 0.67 0.826938
Target:  5'- gCCAGCUCGGAcaccagcaGCuuGCGGggcuuGGAc -3'
miRNA:   3'- gGGUUGAGCCU--------UGggCGCCagu--CCUc -5'
5738 5' -57.2 NC_001806.1 + 86800 0.72 0.588723
Target:  5'- gCCCAGCgcgcgUGGAcguACUCGCGGUCGcGAGc -3'
miRNA:   3'- -GGGUUGa----GCCU---UGGGCGCCAGUcCUC- -5'
5738 5' -57.2 NC_001806.1 + 89584 0.66 0.880222
Target:  5'- gCCgGGCUuaUGGAccGCCgGCGGccgaCAGGAGa -3'
miRNA:   3'- -GGgUUGA--GCCU--UGGgCGCCa---GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 93871 0.67 0.843108
Target:  5'- uCCCGGCUUGccggucggcGGGCCCGCGGgaggCcgccccgaagAGGGGg -3'
miRNA:   3'- -GGGUUGAGC---------CUUGGGCGCCa---G----------UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 101149 0.66 0.892976
Target:  5'- cCCCAcCUCGcAGCCagCGCGGugguccacguuaaUCGGGAGu -3'
miRNA:   3'- -GGGUuGAGCcUUGG--GCGCC-------------AGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 102746 0.67 0.835111
Target:  5'- uCCCGAaagUCGGcACUgcggGUGGUCAGGGGa -3'
miRNA:   3'- -GGGUUg--AGCCuUGGg---CGCCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 109765 0.71 0.63867
Target:  5'- aUCCAGCUCGGAGCuCCGU--UCGGGu- -3'
miRNA:   3'- -GGGUUGAGCCUUG-GGCGccAGUCCuc -5'
5738 5' -57.2 NC_001806.1 + 113748 0.66 0.893626
Target:  5'- aCCGGCcCGGAGCUgGgCGGgCAGGGc -3'
miRNA:   3'- gGGUUGaGCCUUGGgC-GCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 121337 0.68 0.818595
Target:  5'- -aCAGCUCgcggaGGAGCCaGUGGUCGGcGAGc -3'
miRNA:   3'- ggGUUGAG-----CCUUGGgCGCCAGUC-CUC- -5'
5738 5' -57.2 NC_001806.1 + 122561 0.68 0.818595
Target:  5'- gCCCGuuuUUUGGGgggGCCCGUGGUCuccgugaggcuGGAGg -3'
miRNA:   3'- -GGGUu--GAGCCU---UGGGCGCCAGu----------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 122927 0.66 0.880222
Target:  5'- uCCCGACgccaGGGACCa-CGGUCuGGuGg -3'
miRNA:   3'- -GGGUUGag--CCUUGGgcGCCAGuCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.