miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 21513 0.7 0.708155
Target:  5'- cCCCGGCcCGGGG-CCGCGaaCGGGAGg -3'
miRNA:   3'- -GGGUUGaGCCUUgGGCGCcaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 23375 0.67 0.835111
Target:  5'- cCCCGGCUCGGAcGCCCGCGc------- -3'
miRNA:   3'- -GGGUUGAGCCU-UGGGCGCcaguccuc -5'
5738 5' -57.2 NC_001806.1 + 23570 0.7 0.66764
Target:  5'- gCCCAGCcacacggCGGcGCCCGCGGcCGccgcccuGGAGg -3'
miRNA:   3'- -GGGUUGa------GCCuUGGGCGCCaGU-------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 26473 1.09 0.002556
Target:  5'- gCCCAACUCGGAACCCGCGGUCAGGAGc -3'
miRNA:   3'- -GGGUUGAGCCUUGGGCGCCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 26698 0.66 0.893626
Target:  5'- gCCCGGCgUGG-GCCCGgGGggCGGGGc -3'
miRNA:   3'- -GGGUUGaGCCuUGGGCgCCa-GUCCUc -5'
5738 5' -57.2 NC_001806.1 + 26975 0.69 0.76541
Target:  5'- gCCgCGGCUCGuGGGCCCGCGaG-CGGGc- -3'
miRNA:   3'- -GG-GUUGAGC-CUUGGGCGC-CaGUCCuc -5'
5738 5' -57.2 NC_001806.1 + 27311 0.67 0.850149
Target:  5'- aCCAGCguccgccgagucuUCGGGGCCCGgcccauUGGgCGGGAGu -3'
miRNA:   3'- gGGUUG-------------AGCCUUGGGC------GCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 30627 0.69 0.764484
Target:  5'- cUCCGACUCaGGGCCgggggggCGCGGcCAGGGu -3'
miRNA:   3'- -GGGUUGAGcCUUGG-------GCGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 31095 0.71 0.63867
Target:  5'- aCCCGGCUgCGGG--CCGCGGUCcccggcuGGAGc -3'
miRNA:   3'- -GGGUUGA-GCCUugGGCGCCAGu------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 31282 0.73 0.491783
Target:  5'- gCCugcgguCUCGGcACCCGUGGUCcGGGGa -3'
miRNA:   3'- gGGuu----GAGCCuUGGGCGCCAGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 33117 0.73 0.520211
Target:  5'- uCCgGACggggccCGGAcCgCCGCGGUCGGGGGc -3'
miRNA:   3'- -GGgUUGa-----GCCUuG-GGCGCCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 37602 0.67 0.850922
Target:  5'- gCCAGCacCGGGGCCCaggggcuauucGCGG-CGGGAa -3'
miRNA:   3'- gGGUUGa-GCCUUGGG-----------CGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 37791 0.68 0.78368
Target:  5'- gCCGggGCgcgGGggUCCGCGGgCGGGGGg -3'
miRNA:   3'- gGGU--UGag-CCuuGGGCGCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 41718 0.69 0.762628
Target:  5'- cCCCGggACUggCGGGcgcaaacgcgggccACCCGCGGgggacCAGGAGc -3'
miRNA:   3'- -GGGU--UGA--GCCU--------------UGGGCGCCa----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 43284 0.69 0.727578
Target:  5'- uUCCGccCUCGGAggcggAgCCGCGGcugCAGGAGg -3'
miRNA:   3'- -GGGUu-GAGCCU-----UgGGCGCCa--GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 43619 0.71 0.642673
Target:  5'- uCCCAggcuAUUCGGAGCauggccgagagugaCGUGGUCAuGGAGg -3'
miRNA:   3'- -GGGU----UGAGCCUUGg-------------GCGCCAGU-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 46225 0.8 0.213922
Target:  5'- cCCCGGCggCGGAgaccACCCGCGG-CAGGAa -3'
miRNA:   3'- -GGGUUGa-GCCU----UGGGCGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 49099 0.86 0.08642
Target:  5'- gUCGGCUCGcGAACCCGCGGggcgCAGGAGg -3'
miRNA:   3'- gGGUUGAGC-CUUGGGCGCCa---GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 50485 0.73 0.529832
Target:  5'- gCCCugcccCUgGGAAgcCCCGCGGUCGuGGGGg -3'
miRNA:   3'- -GGGuu---GAgCCUU--GGGCGCCAGU-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 53870 0.67 0.850922
Target:  5'- gCCAGCUguuUGGcAGCCgCGCGGggaUCAGGGu -3'
miRNA:   3'- gGGUUGA---GCC-UUGG-GCGCC---AGUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.