miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 1426 0.68 0.78368
Target:  5'- gCCCAGCgaaucccgggCGGcGCCgGCGG-CAGGGc -3'
miRNA:   3'- -GGGUUGa---------GCCuUGGgCGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 2784 0.69 0.7561
Target:  5'- gCCgCGGCggccCGGGGCgCCGCGGgcugggCGGGGGc -3'
miRNA:   3'- -GG-GUUGa---GCCUUG-GGCGCCa-----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 2820 0.68 0.818595
Target:  5'- gCgGGCUCGGGcCCCGgGGgcguGGAGg -3'
miRNA:   3'- gGgUUGAGCCUuGGGCgCCagu-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 3312 0.7 0.684527
Target:  5'- -gCGGCggggaagCGGGGCCCGCGGgucccuccggccgCGGGGGg -3'
miRNA:   3'- ggGUUGa------GCCUUGGGCGCCa------------GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 3416 0.68 0.81009
Target:  5'- gCCAGCgccuccaGGAuCCCGCGG-CAGGcGg -3'
miRNA:   3'- gGGUUGag-----CCUuGGGCGCCaGUCCuC- -5'
5738 5' -57.2 NC_001806.1 + 4053 0.68 0.792625
Target:  5'- gCCCAGCUCGGGcGCCCacaCGGcCGccGGGGc -3'
miRNA:   3'- -GGGUUGAGCCU-UGGGc--GCCaGU--CCUC- -5'
5738 5' -57.2 NC_001806.1 + 4345 0.69 0.746686
Target:  5'- gCCCGgcggcGCUCGaugcGGCCCGCGGaggccgCGGGGGu -3'
miRNA:   3'- -GGGU-----UGAGCc---UUGGGCGCCa-----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 4938 0.68 0.78368
Target:  5'- gCCGGCgUCGGuGCCCGCcG-CGGGGGc -3'
miRNA:   3'- gGGUUG-AGCCuUGGGCGcCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 6058 0.68 0.789956
Target:  5'- gCCCGACUCcgcgccggccccggGGGcggGCCCggGCGG-CGGGGGg -3'
miRNA:   3'- -GGGUUGAG--------------CCU---UGGG--CGCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 6177 0.67 0.850922
Target:  5'- -gCGGCUgCGGAGCaCGCGGacCGGGAGc -3'
miRNA:   3'- ggGUUGA-GCCUUGgGCGCCa-GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 6252 0.68 0.813511
Target:  5'- cCCCGGCUCGGGaucgggaucGCaucggaaagggacaCGCGGacgCGGGGGg -3'
miRNA:   3'- -GGGUUGAGCCU---------UGg-------------GCGCCa--GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 7387 0.69 0.727578
Target:  5'- cCCCGGuCUCccagGGAGCCC-CGGUCuccccGGGAGc -3'
miRNA:   3'- -GGGUU-GAG----CCUUGGGcGCCAG-----UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 7536 0.73 0.514472
Target:  5'- cCCCAcaacauggagcauacGCUCGG-GCCCGCG-UCGGGAu -3'
miRNA:   3'- -GGGU---------------UGAGCCuUGGGCGCcAGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 11238 0.71 0.608659
Target:  5'- uCCCAACUCaGGGA-CUGCGGUCGGu-- -3'
miRNA:   3'- -GGGUUGAG-CCUUgGGCGCCAGUCcuc -5'
5738 5' -57.2 NC_001806.1 + 13488 0.66 0.887031
Target:  5'- uCCgGACgucuUCGGAGgcCCCGCGGacaaUCuGGGGg -3'
miRNA:   3'- -GGgUUG----AGCCUU--GGGCGCC----AGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 15078 0.68 0.807508
Target:  5'- aCUGGuCUCGGGGCgCGCGGgggaguuguugggaUCGGGGGa -3'
miRNA:   3'- gGGUU-GAGCCUUGgGCGCC--------------AGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 17055 0.67 0.850922
Target:  5'- cCCCGAacgaCGGGcCCCGgGGUUuuaAGGAGc -3'
miRNA:   3'- -GGGUUga--GCCUuGGGCgCCAG---UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 18564 0.68 0.78368
Target:  5'- -aCAGCgaGGGACCCGCGGgguUCuGGGGu -3'
miRNA:   3'- ggGUUGagCCUUGGGCGCC---AGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 20392 0.67 0.858546
Target:  5'- gUCCGGCgggCGGGACCgGgGGgccCGGGGa -3'
miRNA:   3'- -GGGUUGa--GCCUUGGgCgCCa--GUCCUc -5'
5738 5' -57.2 NC_001806.1 + 21284 0.68 0.801431
Target:  5'- gCCCGGCgggaCGGGAgggccCCCGCGG-CGGGc- -3'
miRNA:   3'- -GGGUUGa---GCCUU-----GGGCGCCaGUCCuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.