miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 135225 0.66 0.900001
Target:  5'- cCCCAggaugACaUCGGAGCCCGUgauGGgcgcgccuaccCGGGGGg -3'
miRNA:   3'- -GGGU-----UG-AGCCUUGGGCG---CCa----------GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 147762 0.72 0.588723
Target:  5'- uCCCGACgcggccgCGGAcgcgggggGCCCGgGG-CGGGGGg -3'
miRNA:   3'- -GGGUUGa------GCCU--------UGGGCgCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 147210 0.72 0.588723
Target:  5'- cCCCGGCggCGGAAgaggcggccCCCGCGGgggUCGGGGc -3'
miRNA:   3'- -GGGUUGa-GCCUU---------GGGCGCC---AGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 11238 0.71 0.608659
Target:  5'- uCCCAACUCaGGGA-CUGCGGUCGGu-- -3'
miRNA:   3'- -GGGUUGAG-CCUUgGGCGCCAGUCcuc -5'
5738 5' -57.2 NC_001806.1 + 109765 0.71 0.63867
Target:  5'- aUCCAGCUCGGAGCuCCGU--UCGGGu- -3'
miRNA:   3'- -GGGUUGAGCCUUG-GGCGccAGUCCuc -5'
5738 5' -57.2 NC_001806.1 + 31095 0.71 0.63867
Target:  5'- aCCCGGCUgCGGG--CCGCGGUCcccggcuGGAGc -3'
miRNA:   3'- -GGGUUGA-GCCUugGGCGCCAGu------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 43619 0.71 0.642673
Target:  5'- uCCCAggcuAUUCGGAGCauggccgagagugaCGUGGUCAuGGAGg -3'
miRNA:   3'- -GGGU----UGAGCCUUGg-------------GCGCCAGU-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 144972 0.7 0.658665
Target:  5'- gCCCGGCcCGGGGCCCcgGCGGacccaAGGGGc -3'
miRNA:   3'- -GGGUUGaGCCUUGGG--CGCCag---UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 23570 0.7 0.66764
Target:  5'- gCCCAGCcacacggCGGcGCCCGCGGcCGccgcccuGGAGg -3'
miRNA:   3'- -GGGUUGa------GCCuUGGGCGCCaGU-------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 86800 0.72 0.588723
Target:  5'- gCCCAGCgcgcgUGGAcguACUCGCGGUCGcGAGc -3'
miRNA:   3'- -GGGUUGa----GCCU---UGGGCGCCAGUcCUC- -5'
5738 5' -57.2 NC_001806.1 + 50485 0.73 0.529832
Target:  5'- gCCCugcccCUgGGAAgcCCCGCGGUCGuGGGGg -3'
miRNA:   3'- -GGGuu---GAgCCUU--GGGCGCCAGU-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 133123 0.73 0.529832
Target:  5'- gCCAGCUCGGugaAGuuCGCGGUCugcGGGGg -3'
miRNA:   3'- gGGUUGAGCC---UUggGCGCCAGu--CCUC- -5'
5738 5' -57.2 NC_001806.1 + 49099 0.86 0.08642
Target:  5'- gUCGGCUCGcGAACCCGCGGggcgCAGGAGg -3'
miRNA:   3'- gGGUUGAGC-CUUGGGCGCCa---GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 46225 0.8 0.213922
Target:  5'- cCCCGGCggCGGAgaccACCCGCGG-CAGGAa -3'
miRNA:   3'- -GGGUUGa-GCCU----UGGGCGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 65699 0.79 0.246768
Target:  5'- cCCCAAC-CGGGGCCCGCGcuucgaCGGGAGa -3'
miRNA:   3'- -GGGUUGaGCCUUGGGCGCca----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 132757 0.76 0.378242
Target:  5'- -gCAGC-CGGAugccuccuGCCCGCGGUgCGGGAGg -3'
miRNA:   3'- ggGUUGaGCCU--------UGGGCGCCA-GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 146786 0.74 0.486182
Target:  5'- gCCGucggguACUCGGGgggcaucacgugguuACCCGCGGUCucgGGGAGc -3'
miRNA:   3'- gGGU------UGAGCCU---------------UGGGCGCCAG---UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 31282 0.73 0.491783
Target:  5'- gCCugcgguCUCGGcACCCGUGGUCcGGGGa -3'
miRNA:   3'- gGGuu----GAGCCuUGGGCGCCAGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 7536 0.73 0.514472
Target:  5'- cCCCAcaacauggagcauacGCUCGG-GCCCGCG-UCGGGAu -3'
miRNA:   3'- -GGGU---------------UGAGCCuUGGGCGCcAGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 33117 0.73 0.520211
Target:  5'- uCCgGACggggccCGGAcCgCCGCGGUCGGGGGc -3'
miRNA:   3'- -GGgUUGa-----GCCUuG-GGCGCCAGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.