miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 26975 0.69 0.76541
Target:  5'- gCCgCGGCUCGuGGGCCCGCGaG-CGGGc- -3'
miRNA:   3'- -GG-GUUGAGC-CUUGGGCGC-CaGUCCuc -5'
5738 5' -57.2 NC_001806.1 + 30627 0.69 0.764484
Target:  5'- cUCCGACUCaGGGCCgggggggCGCGGcCAGGGu -3'
miRNA:   3'- -GGGUUGAGcCUUGG-------GCGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 41718 0.69 0.762628
Target:  5'- cCCCGggACUggCGGGcgcaaacgcgggccACCCGCGGgggacCAGGAGc -3'
miRNA:   3'- -GGGU--UGA--GCCU--------------UGGGCGCCa----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 2784 0.69 0.7561
Target:  5'- gCCgCGGCggccCGGGGCgCCGCGGgcugggCGGGGGc -3'
miRNA:   3'- -GG-GUUGa---GCCUUG-GGCGCCa-----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 4345 0.69 0.746686
Target:  5'- gCCCGgcggcGCUCGaugcGGCCCGCGGaggccgCGGGGGu -3'
miRNA:   3'- -GGGU-----UGAGCc---UUGGGCGCCa-----GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 81611 0.69 0.737176
Target:  5'- gCCA--UCGGGACCgGaGGUCGGGAa -3'
miRNA:   3'- gGGUugAGCCUUGGgCgCCAGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 7387 0.69 0.727578
Target:  5'- cCCCGGuCUCccagGGAGCCC-CGGUCuccccGGGAGc -3'
miRNA:   3'- -GGGUU-GAG----CCUUGGGcGCCAG-----UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 43284 0.69 0.727578
Target:  5'- uUCCGccCUCGGAggcggAgCCGCGGcugCAGGAGg -3'
miRNA:   3'- -GGGUu-GAGCCU-----UgGGCGCCa--GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 130442 0.69 0.717901
Target:  5'- gCCCAGCgcgaucuaCGGGAgCUGCGGUgcCGGGAu -3'
miRNA:   3'- -GGGUUGa-------GCCUUgGGCGCCA--GUCCUc -5'
5738 5' -57.2 NC_001806.1 + 21513 0.7 0.708155
Target:  5'- cCCCGGCcCGGGG-CCGCGaaCGGGAGg -3'
miRNA:   3'- -GGGUUGaGCCUUgGGCGCcaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 85726 0.7 0.708155
Target:  5'- aCCCAccGCcCcGAACCCuGCGGUCcGGAGc -3'
miRNA:   3'- -GGGU--UGaGcCUUGGG-CGCCAGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 3312 0.7 0.684527
Target:  5'- -gCGGCggggaagCGGGGCCCGCGGgucccuccggccgCGGGGGg -3'
miRNA:   3'- ggGUUGa------GCCUUGGGCGCCa------------GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 64953 0.7 0.668636
Target:  5'- aCCGGCgUCGGcGCCCG-GGcCGGGGGu -3'
miRNA:   3'- gGGUUG-AGCCuUGGGCgCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 23570 0.7 0.66764
Target:  5'- gCCCAGCcacacggCGGcGCCCGCGGcCGccgcccuGGAGg -3'
miRNA:   3'- -GGGUUGa------GCCuUGGGCGCCaGU-------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 144972 0.7 0.658665
Target:  5'- gCCCGGCcCGGGGCCCcgGCGGacccaAGGGGc -3'
miRNA:   3'- -GGGUUGaGCCUUGGG--CGCCag---UCCUC- -5'
5738 5' -57.2 NC_001806.1 + 43619 0.71 0.642673
Target:  5'- uCCCAggcuAUUCGGAGCauggccgagagugaCGUGGUCAuGGAGg -3'
miRNA:   3'- -GGGU----UGAGCCUUGg-------------GCGCCAGU-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 109765 0.71 0.63867
Target:  5'- aUCCAGCUCGGAGCuCCGU--UCGGGu- -3'
miRNA:   3'- -GGGUUGAGCCUUG-GGCGccAGUCCuc -5'
5738 5' -57.2 NC_001806.1 + 31095 0.71 0.63867
Target:  5'- aCCCGGCUgCGGG--CCGCGGUCcccggcuGGAGc -3'
miRNA:   3'- -GGGUUGA-GCCUugGGCGCCAGu------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 11238 0.71 0.608659
Target:  5'- uCCCAACUCaGGGA-CUGCGGUCGGu-- -3'
miRNA:   3'- -GGGUUGAG-CCUUgGGCGCCAGUCcuc -5'
5738 5' -57.2 NC_001806.1 + 147210 0.72 0.588723
Target:  5'- cCCCGGCggCGGAAgaggcggccCCCGCGGgggUCGGGGc -3'
miRNA:   3'- -GGGUUGa-GCCUU---------GGGCGCC---AGUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.