miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5738 5' -57.2 NC_001806.1 + 130829 0.67 0.835111
Target:  5'- gCCuGCaUUGGGACUCgGCGGcCGGGGGa -3'
miRNA:   3'- gGGuUG-AGCCUUGGG-CGCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 102746 0.67 0.835111
Target:  5'- uCCCGAaagUCGGcACUgcggGUGGUCAGGGGa -3'
miRNA:   3'- -GGGUUg--AGCCuUGGg---CGCCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 57663 0.67 0.830228
Target:  5'- cCCCGgaaggcggagaaggcGC-CGGGGCuuGCuucuccGGUCGGGAGg -3'
miRNA:   3'- -GGGU---------------UGaGCCUUGggCG------CCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 85942 0.67 0.826938
Target:  5'- gCCAGCUCGGAcaccagcaGCuuGCGGggcuuGGAc -3'
miRNA:   3'- gGGUUGAGCCU--------UGggCGCCagu--CCUc -5'
5738 5' -57.2 NC_001806.1 + 56652 0.67 0.826111
Target:  5'- aUCGGC-CGGcGGCCCGUgggaucguuggggGGUCGGGGGg -3'
miRNA:   3'- gGGUUGaGCC-UUGGGCG-------------CCAGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 2820 0.68 0.818595
Target:  5'- gCgGGCUCGGGcCCCGgGGgcguGGAGg -3'
miRNA:   3'- gGgUUGAGCCUuGGGCgCCagu-CCUC- -5'
5738 5' -57.2 NC_001806.1 + 122561 0.68 0.818595
Target:  5'- gCCCGuuuUUUGGGgggGCCCGUGGUCuccgugaggcuGGAGg -3'
miRNA:   3'- -GGGUu--GAGCCU---UGGGCGCCAGu----------CCUC- -5'
5738 5' -57.2 NC_001806.1 + 121337 0.68 0.818595
Target:  5'- -aCAGCUCgcggaGGAGCCaGUGGUCGGcGAGc -3'
miRNA:   3'- ggGUUGAG-----CCUUGGgCGCCAGUC-CUC- -5'
5738 5' -57.2 NC_001806.1 + 6252 0.68 0.813511
Target:  5'- cCCCGGCUCGGGaucgggaucGCaucggaaagggacaCGCGGacgCGGGGGg -3'
miRNA:   3'- -GGGUUGAGCCU---------UGg-------------GCGCCa--GUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 72372 0.68 0.81009
Target:  5'- gUCgGGCcCGGAACCCGCGGcUCcugcGGAc -3'
miRNA:   3'- -GGgUUGaGCCUUGGGCGCC-AGu---CCUc -5'
5738 5' -57.2 NC_001806.1 + 84422 0.68 0.81009
Target:  5'- cCCCGAgaCGcAGCCCGgGGaCGGGGGc -3'
miRNA:   3'- -GGGUUgaGCcUUGGGCgCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 3416 0.68 0.81009
Target:  5'- gCCAGCgccuccaGGAuCCCGCGG-CAGGcGg -3'
miRNA:   3'- gGGUUGag-----CCUuGGGCGCCaGUCCuC- -5'
5738 5' -57.2 NC_001806.1 + 15078 0.68 0.807508
Target:  5'- aCUGGuCUCGGGGCgCGCGGgggaguuguugggaUCGGGGGa -3'
miRNA:   3'- gGGUU-GAGCCUUGgGCGCC--------------AGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 21284 0.68 0.801431
Target:  5'- gCCCGGCgggaCGGGAgggccCCCGCGG-CGGGc- -3'
miRNA:   3'- -GGGUUGa---GCCUU-----GGGCGCCaGUCCuc -5'
5738 5' -57.2 NC_001806.1 + 4053 0.68 0.792625
Target:  5'- gCCCAGCUCGGGcGCCCacaCGGcCGccGGGGc -3'
miRNA:   3'- -GGGUUGAGCCU-UGGGc--GCCaGU--CCUC- -5'
5738 5' -57.2 NC_001806.1 + 6058 0.68 0.789956
Target:  5'- gCCCGACUCcgcgccggccccggGGGcggGCCCggGCGG-CGGGGGg -3'
miRNA:   3'- -GGGUUGAG--------------CCU---UGGG--CGCCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 4938 0.68 0.78368
Target:  5'- gCCGGCgUCGGuGCCCGCcG-CGGGGGc -3'
miRNA:   3'- gGGUUG-AGCCuUGGGCGcCaGUCCUC- -5'
5738 5' -57.2 NC_001806.1 + 18564 0.68 0.78368
Target:  5'- -aCAGCgaGGGACCCGCGGgguUCuGGGGu -3'
miRNA:   3'- ggGUUGagCCUUGGGCGCC---AGuCCUC- -5'
5738 5' -57.2 NC_001806.1 + 1426 0.68 0.78368
Target:  5'- gCCCAGCgaaucccgggCGGcGCCgGCGG-CAGGGc -3'
miRNA:   3'- -GGGUUGa---------GCCuUGGgCGCCaGUCCUc -5'
5738 5' -57.2 NC_001806.1 + 37791 0.68 0.78368
Target:  5'- gCCGggGCgcgGGggUCCGCGGgCGGGGGg -3'
miRNA:   3'- gGGU--UGag-CCuuGGGCGCCaGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.