Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5742 | 5' | -49.5 | NC_001806.1 | + | 6026 | 0.73 | 0.868245 |
Target: 5'- uUAUUaGGGCGAAGUGCGAGCaCUg- -3' miRNA: 3'- uAUAAcCCUGCUUCACGCUUGcGAag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6454 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6476 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6498 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6520 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6542 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 15623 | 0.66 | 0.99636 |
Target: 5'- ---cUGGGGCGAAGcgcgccgucgaagGUGAGgGCUUUg -3' miRNA: 3'- uauaACCCUGCUUCa------------CGCUUgCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 20246 | 1.09 | 0.010654 |
Target: 5'- uAUAUUGGGACGAAGUGCGAACGCUUCg -3' miRNA: 3'- -UAUAACCCUGCUUCACGCUUGCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 24957 | 0.69 | 0.971189 |
Target: 5'- ---cUGGGACGAAGacgacgGCG-GCGCgUUCg -3' miRNA: 3'- uauaACCCUGCUUCa-----CGCuUGCG-AAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 25011 | 0.67 | 0.990184 |
Target: 5'- ----cGGGACGggGcG-GGGCGCUUg -3' miRNA: 3'- uauaaCCCUGCuuCaCgCUUGCGAAg -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 25413 | 0.68 | 0.988774 |
Target: 5'- ----gGGGGCGAGGgGCGGugGUg-- -3' miRNA: 3'- uauaaCCCUGCUUCaCGCUugCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 41850 | 0.66 | 0.995287 |
Target: 5'- ----cGGGcGCGuacGUGCGAGCGCg-- -3' miRNA: 3'- uauaaCCC-UGCuu-CACGCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 43978 | 0.67 | 0.990184 |
Target: 5'- ---gUGGGAUGGAGggGCGggUGUg-- -3' miRNA: 3'- uauaACCCUGCUUCa-CGCuuGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 44568 | 0.67 | 0.990184 |
Target: 5'- --uUUGGaAgGAAG-GCGAugGCUUCu -3' miRNA: 3'- uauAACCcUgCUUCaCGCUugCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 49986 | 0.68 | 0.983589 |
Target: 5'- ----cGGGugGguGUGCGGgacGCGcCUUCa -3' miRNA: 3'- uauaaCCCugCuuCACGCU---UGC-GAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 55098 | 0.69 | 0.974088 |
Target: 5'- ----gGGGGCGGAacaUGCGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUc--ACGCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 61662 | 0.72 | 0.917165 |
Target: 5'- uUGUUGGuGCGAAGguagGCGAugGCggCa -3' miRNA: 3'- uAUAACCcUGCUUCa---CGCUugCGaaG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 63007 | 0.67 | 0.994494 |
Target: 5'- ----aGGGACGGGccccGCGAACGCa-- -3' miRNA: 3'- uauaaCCCUGCUUca--CGCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 76936 | 0.73 | 0.852047 |
Target: 5'- ---gUGGGACGAGGUauGgGGuCGCUUCg -3' miRNA: 3'- uauaACCCUGCUUCA--CgCUuGCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 81666 | 0.67 | 0.990184 |
Target: 5'- ---gUGGGGCGAAG-GCguccgGAACGCa-- -3' miRNA: 3'- uauaACCCUGCUUCaCG-----CUUGCGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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