Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5742 | 5' | -49.5 | NC_001806.1 | + | 109575 | 0.66 | 0.997127 |
Target: 5'- cGUAUgGGGACGGgguauacacaaAGUGCGAggaaACGUUg- -3' miRNA: 3'- -UAUAaCCCUGCU-----------UCACGCU----UGCGAag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 137594 | 0.69 | 0.979239 |
Target: 5'- ----gGGGGCGAGGaguUGCGGAacgaGUUUCg -3' miRNA: 3'- uauaaCCCUGCUUC---ACGCUUg---CGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 120200 | 0.68 | 0.98151 |
Target: 5'- -gGUUGGGG-GAGGUGaccaGGCGCUUCc -3' miRNA: 3'- uaUAACCCUgCUUCACgc--UUGCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 141327 | 0.68 | 0.98151 |
Target: 5'- ----aGGGGCGAcgGGUGCGAaaacuugaggACGCa-- -3' miRNA: 3'- uauaaCCCUGCU--UCACGCU----------UGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 49986 | 0.68 | 0.983589 |
Target: 5'- ----cGGGugGguGUGCGGgacGCGcCUUCa -3' miRNA: 3'- uauaaCCCugCuuCACGCU---UGC-GAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6454 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6476 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6498 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6520 | 0.68 | 0.985486 |
Target: 5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 147623 | 0.69 | 0.976768 |
Target: 5'- ----aGGGACG-AGUGCGAcuggggcacacgGCGCgcgUCc -3' miRNA: 3'- uauaaCCCUGCuUCACGCU------------UGCGa--AG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 55098 | 0.69 | 0.974088 |
Target: 5'- ----gGGGGCGGAacaUGCGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCUUc--ACGCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 84438 | 0.69 | 0.973808 |
Target: 5'- ----gGGGACGggGgccgguuUGUGAGCcuGCUUCg -3' miRNA: 3'- uauaaCCCUGCuuC-------ACGCUUG--CGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 89702 | 0.83 | 0.380371 |
Target: 5'- uUAUUaGGACaAAGUGCGAACGCUUCg -3' miRNA: 3'- uAUAAcCCUGcUUCACGCUUGCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 76936 | 0.73 | 0.852047 |
Target: 5'- ---gUGGGACGAGGUauGgGGuCGCUUCg -3' miRNA: 3'- uauaACCCUGCUUCA--CgCUuGCGAAG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 6026 | 0.73 | 0.868245 |
Target: 5'- uUAUUaGGGCGAAGUGCGAGCaCUg- -3' miRNA: 3'- uAUAAcCCUGCUUCACGCUUGcGAag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 95297 | 0.73 | 0.883492 |
Target: 5'- ----gGGGGCGggGggcgcgGCGGACGCg-- -3' miRNA: 3'- uauaaCCCUGCuuCa-----CGCUUGCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 61662 | 0.72 | 0.917165 |
Target: 5'- uUGUUGGuGCGAAGguagGCGAugGCggCa -3' miRNA: 3'- uAUAACCcUGCUUCa---CGCUugCGaaG- -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 103438 | 0.71 | 0.934193 |
Target: 5'- ---gUGGGAUGAGGgggcGCGAugGCa-- -3' miRNA: 3'- uauaACCCUGCUUCa---CGCUugCGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 128931 | 0.7 | 0.964707 |
Target: 5'- ----gGGGACGAcgAGUGCGAACaGUa-- -3' miRNA: 3'- uauaaCCCUGCU--UCACGCUUG-CGaag -5' |
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5742 | 5' | -49.5 | NC_001806.1 | + | 24957 | 0.69 | 0.971189 |
Target: 5'- ---cUGGGACGAAGacgacgGCG-GCGCgUUCg -3' miRNA: 3'- uauaACCCUGCUUCa-----CGCuUGCG-AAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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