miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 5' -56.3 NC_001806.1 + 19642 1.09 0.002591
Target:  5'- gACGAGCAGGAAGCGGUCCACGCAACGg -3'
miRNA:   3'- -UGCUCGUCCUUCGCCAGGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 147792 0.81 0.192458
Target:  5'- -gGGGCGGGggGCGGagCCugGCAugGg -3'
miRNA:   3'- ugCUCGUCCuuCGCCa-GGugCGUugC- -5'
5743 5' -56.3 NC_001806.1 + 139212 0.79 0.257858
Target:  5'- gACGAGCugcGGAGGCGG--CACGCGACGg -3'
miRNA:   3'- -UGCUCGu--CCUUCGCCagGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 25894 0.78 0.296197
Target:  5'- cGCGcaaaaaaGGCGGGcGGCGGUCCGgGCGGCGu -3'
miRNA:   3'- -UGC-------UCGUCCuUCGCCAGGUgCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 5764 0.76 0.379946
Target:  5'- aACGGGCAGGggGCGGggcCCGgGCccCGa -3'
miRNA:   3'- -UGCUCGUCCuuCGCCa--GGUgCGuuGC- -5'
5743 5' -56.3 NC_001806.1 + 25939 0.75 0.422517
Target:  5'- gGCGGGCGuGGggGCGGggCCGCGgGAgCGg -3'
miRNA:   3'- -UGCUCGU-CCuuCGCCa-GGUGCgUU-GC- -5'
5743 5' -56.3 NC_001806.1 + 92891 0.74 0.467828
Target:  5'- aGCGuGCAGGcugcggccgcGUGGUCCGCGCAggGCGg -3'
miRNA:   3'- -UGCuCGUCCuu--------CGCCAGGUGCGU--UGC- -5'
5743 5' -56.3 NC_001806.1 + 9199 0.74 0.486642
Target:  5'- cGCGGGUguggcgAGGgcGCGGUCgACGUGGCGa -3'
miRNA:   3'- -UGCUCG------UCCuuCGCCAGgUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 68947 0.74 0.496182
Target:  5'- cCGAGCGGGggGCuguGGUCC-CGCcGCc -3'
miRNA:   3'- uGCUCGUCCuuCG---CCAGGuGCGuUGc -5'
5743 5' -56.3 NC_001806.1 + 83809 0.73 0.505807
Target:  5'- gGCGAGgAGGggGCGGggUCgGCGCGGg- -3'
miRNA:   3'- -UGCUCgUCCuuCGCC--AGgUGCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 132777 0.73 0.51551
Target:  5'- cGCGGuGCGGGAGGCGG-UgGCGCggUGg -3'
miRNA:   3'- -UGCU-CGUCCUUCGCCaGgUGCGuuGC- -5'
5743 5' -56.3 NC_001806.1 + 2516 0.73 0.535136
Target:  5'- cUGGGCGgcGGggGCGGgcccggcgcaCCGCGCGGCGa -3'
miRNA:   3'- uGCUCGU--CCuuCGCCa---------GGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 132350 0.73 0.545047
Target:  5'- uGCGAGguGGGccuGCGG-CCACGCGGg- -3'
miRNA:   3'- -UGCUCguCCUu--CGCCaGGUGCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 26827 0.72 0.56504
Target:  5'- cGCGGGCGGGGAGgGGgcgCCGgagcccccCGCGACc -3'
miRNA:   3'- -UGCUCGUCCUUCgCCa--GGU--------GCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 2881 0.72 0.56504
Target:  5'- cCGAGCcGGggGC-GUCCGCGCcGCu -3'
miRNA:   3'- uGCUCGuCCuuCGcCAGGUGCGuUGc -5'
5743 5' -56.3 NC_001806.1 + 113411 0.72 0.585219
Target:  5'- -gGAGCuGGggGUGGgacgCCACGCcAUGg -3'
miRNA:   3'- ugCUCGuCCuuCGCCa---GGUGCGuUGC- -5'
5743 5' -56.3 NC_001806.1 + 102128 0.72 0.585219
Target:  5'- uGCaGGCGGuuguuGAGGCGGUCCGCGUAcACGu -3'
miRNA:   3'- -UGcUCGUC-----CUUCGCCAGGUGCGU-UGC- -5'
5743 5' -56.3 NC_001806.1 + 49498 0.72 0.585219
Target:  5'- -gGGGCGGGucGGCGGUUCGCGgGugGc -3'
miRNA:   3'- ugCUCGUCCu-UCGCCAGGUGCgUugC- -5'
5743 5' -56.3 NC_001806.1 + 27262 0.72 0.595363
Target:  5'- -gGGGCGGGAcuggccaaucGGCGGccgCCAgCGCGGCGg -3'
miRNA:   3'- ugCUCGUCCU----------UCGCCa--GGU-GCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 151439 0.71 0.615723
Target:  5'- cACcGGCGGGggGCGG-CgGCGgGGCGg -3'
miRNA:   3'- -UGcUCGUCCuuCGCCaGgUGCgUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.