miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 5' -56.3 NC_001806.1 + 147702 0.71 0.615723
Target:  5'- gGCGGGCcccGGAGGCGGcgcUCgCACGCA-CGg -3'
miRNA:   3'- -UGCUCGu--CCUUCGCC---AG-GUGCGUuGC- -5'
5743 5' -56.3 NC_001806.1 + 95288 0.71 0.625925
Target:  5'- gGCGcGCAuGGggGCGGgggGCGCGGCGg -3'
miRNA:   3'- -UGCuCGU-CCuuCGCCaggUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 30503 0.71 0.645316
Target:  5'- uCGAGCAGGAGGCGGcggugcgUCCgaggaagagGCGCGGg- -3'
miRNA:   3'- uGCUCGUCCUUCGCC-------AGG---------UGCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 58786 0.7 0.675834
Target:  5'- cACGAGagaCAGGAAcGCcgccgugGGUCCGCGcCAGCGa -3'
miRNA:   3'- -UGCUC---GUCCUU-CG-------CCAGGUGC-GUUGC- -5'
5743 5' -56.3 NC_001806.1 + 83265 0.7 0.676848
Target:  5'- gGCGGGCGacGGAGGgGGUUCGgGCGggcGCGg -3'
miRNA:   3'- -UGCUCGU--CCUUCgCCAGGUgCGU---UGC- -5'
5743 5' -56.3 NC_001806.1 + 74756 0.7 0.686956
Target:  5'- -gGAGCGcGGGAGCGGgcgaagguggCC-CGCGACGc -3'
miRNA:   3'- ugCUCGU-CCUUCGCCa---------GGuGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 34307 0.7 0.686956
Target:  5'- aGCG-GCGGGggGCGG--CGCGCcgGACGg -3'
miRNA:   3'- -UGCuCGUCCuuCGCCagGUGCG--UUGC- -5'
5743 5' -56.3 NC_001806.1 + 77383 0.7 0.69702
Target:  5'- gACGGGCGcGGgcGCGGcggCCGCGCccGCGc -3'
miRNA:   3'- -UGCUCGU-CCuuCGCCa--GGUGCGu-UGC- -5'
5743 5' -56.3 NC_001806.1 + 9235 0.7 0.706032
Target:  5'- gGCGGGCGGucaugucGggGgGGUCCGCGUucguCGg -3'
miRNA:   3'- -UGCUCGUC-------CuuCgCCAGGUGCGuu--GC- -5'
5743 5' -56.3 NC_001806.1 + 45283 0.7 0.70703
Target:  5'- aGCG-GCGGGAGacGCGGgcCCGCGCGGgGa -3'
miRNA:   3'- -UGCuCGUCCUU--CGCCa-GGUGCGUUgC- -5'
5743 5' -56.3 NC_001806.1 + 24899 0.7 0.716977
Target:  5'- -gGGGC-GGAGGCGGgcuuggCCACGCccccGCGg -3'
miRNA:   3'- ugCUCGuCCUUCGCCa-----GGUGCGu---UGC- -5'
5743 5' -56.3 NC_001806.1 + 127767 0.69 0.726851
Target:  5'- uGCGGGCcuGuGGCGGccgucucgcgaUCCGCGCAugGa -3'
miRNA:   3'- -UGCUCGucCuUCGCC-----------AGGUGCGUugC- -5'
5743 5' -56.3 NC_001806.1 + 146832 0.69 0.736645
Target:  5'- -gGAGCAGGGugcGGCGGcUCCAgccggggacCGCGGCc -3'
miRNA:   3'- ugCUCGUCCU---UCGCC-AGGU---------GCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 136976 0.69 0.746348
Target:  5'- cGCGAGCGuGGu-GCGGUCaugGCGGCGg -3'
miRNA:   3'- -UGCUCGU-CCuuCGCCAGgugCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 57155 0.69 0.746348
Target:  5'- cGCGAG-GGGAGGgGGUgCGCGCAuaaagcccagcACGg -3'
miRNA:   3'- -UGCUCgUCCUUCgCCAgGUGCGU-----------UGC- -5'
5743 5' -56.3 NC_001806.1 + 5660 0.69 0.755951
Target:  5'- cAUGGGCGGGgcGCgagggcgggugGGUCCGCGCccCGc -3'
miRNA:   3'- -UGCUCGUCCuuCG-----------CCAGGUGCGuuGC- -5'
5743 5' -56.3 NC_001806.1 + 21762 0.69 0.755951
Target:  5'- cGCGGGCcgucGGgcGgGGUCCgucgaGCGCGGCGc -3'
miRNA:   3'- -UGCUCGu---CCuuCgCCAGG-----UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 6092 0.69 0.762609
Target:  5'- gGCG-GCGGGggGCGGgucucUCCgGCGCAcauaaaggcccggcGCGa -3'
miRNA:   3'- -UGCuCGUCCuuCGCC-----AGG-UGCGU--------------UGC- -5'
5743 5' -56.3 NC_001806.1 + 38819 0.69 0.774822
Target:  5'- cCGGGCGGGGguggauacgcuGGCuggguuGGUCUugGUAACGg -3'
miRNA:   3'- uGCUCGUCCU-----------UCG------CCAGGugCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 2990 0.68 0.784072
Target:  5'- cGCGGGgAGGcGGCGGcggCCGC-CAGCGc -3'
miRNA:   3'- -UGCUCgUCCuUCGCCa--GGUGcGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.