miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 5' -56.3 NC_001806.1 + 62542 0.66 0.872883
Target:  5'- uCGAcGUAGGggGCgcGGUCCGCacacaggucgaucaGCAACu -3'
miRNA:   3'- uGCU-CGUCCuuCG--CCAGGUG--------------CGUUGc -5'
5743 5' -56.3 NC_001806.1 + 24673 0.67 0.867738
Target:  5'- -gGGGCGcGAGGCGGUgCGCGcCGGCc -3'
miRNA:   3'- ugCUCGUcCUUCGCCAgGUGC-GUUGc -5'
5743 5' -56.3 NC_001806.1 + 151549 0.67 0.86021
Target:  5'- cCGGGCGgccGGggGCGGcgggggCCGCgaugGCGGCGg -3'
miRNA:   3'- uGCUCGU---CCuuCGCCa-----GGUG----CGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 147496 0.67 0.86021
Target:  5'- gGCGGcGCcggAGGggGCGGcgCCGCGgGAgGg -3'
miRNA:   3'- -UGCU-CG---UCCuuCGCCa-GGUGCgUUgC- -5'
5743 5' -56.3 NC_001806.1 + 53105 0.67 0.86021
Target:  5'- aGCGAGgaCGGGggGCGuGUCUACGaggaAAUa -3'
miRNA:   3'- -UGCUC--GUCCuuCGC-CAGGUGCg---UUGc -5'
5743 5' -56.3 NC_001806.1 + 133703 0.67 0.86021
Target:  5'- cCGgaGGCGGGGAGuCGGUCgGCGUccccGCGa -3'
miRNA:   3'- uGC--UCGUCCUUC-GCCAGgUGCGu---UGC- -5'
5743 5' -56.3 NC_001806.1 + 9796 0.67 0.852477
Target:  5'- gACGuGCGGGuGGGUGGgcucggccaaaUCCGCGCcGCGc -3'
miRNA:   3'- -UGCuCGUCC-UUCGCC-----------AGGUGCGuUGC- -5'
5743 5' -56.3 NC_001806.1 + 31310 0.67 0.852477
Target:  5'- -gGAGCAGGggGCGucgaCC-CGgGACGa -3'
miRNA:   3'- ugCUCGUCCuuCGCca--GGuGCgUUGC- -5'
5743 5' -56.3 NC_001806.1 + 107722 0.67 0.852477
Target:  5'- uCGGuGCGGGggGCaGUCUGC-CAACGu -3'
miRNA:   3'- uGCU-CGUCCuuCGcCAGGUGcGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 140749 0.67 0.852477
Target:  5'- aACGAGgAGGucuUGGUgCACGCAAUGc -3'
miRNA:   3'- -UGCUCgUCCuucGCCAgGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 21191 0.67 0.844545
Target:  5'- gACGAGCGGGggGCccucggguGGggCGCGgaGACGg -3'
miRNA:   3'- -UGCUCGUCCuuCG--------CCagGUGCg-UUGC- -5'
5743 5' -56.3 NC_001806.1 + 57824 0.67 0.844545
Target:  5'- uGCGGGCGGGGGuGCGGU--GgGCGACc -3'
miRNA:   3'- -UGCUCGUCCUU-CGCCAggUgCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 2769 0.67 0.844545
Target:  5'- cGCGGGCGGGccugcgccgcGGCGGcCCgggGCGCcGCGg -3'
miRNA:   3'- -UGCUCGUCCu---------UCGCCaGG---UGCGuUGC- -5'
5743 5' -56.3 NC_001806.1 + 55091 0.67 0.836421
Target:  5'- -aGAGaCGGGggGCGGaaCAUGCGgACGc -3'
miRNA:   3'- ugCUC-GUCCuuCGCCagGUGCGU-UGC- -5'
5743 5' -56.3 NC_001806.1 + 71534 0.67 0.836421
Target:  5'- gGCGGGCGGGggGgGGgguggaagaCCaagacagacaaACGCAGCu -3'
miRNA:   3'- -UGCUCGUCCuuCgCCa--------GG-----------UGCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 19527 0.68 0.827272
Target:  5'- -gGGGCGGGGaucggagAGCGGgacgCCGCGCuuuuACa -3'
miRNA:   3'- ugCUCGUCCU-------UCGCCa---GGUGCGu---UGc -5'
5743 5' -56.3 NC_001806.1 + 92929 0.68 0.819627
Target:  5'- gGCGGGCcuGGAGGcCGGggcCCGCGCGcugAUGg -3'
miRNA:   3'- -UGCUCGu-CCUUC-GCCa--GGUGCGU---UGC- -5'
5743 5' -56.3 NC_001806.1 + 16292 0.68 0.819627
Target:  5'- -gGGGCAGGAucgccgGGUGGUCCAguCGCcucAGCa -3'
miRNA:   3'- ugCUCGUCCU------UCGCCAGGU--GCG---UUGc -5'
5743 5' -56.3 NC_001806.1 + 45857 0.68 0.810972
Target:  5'- ---cGCGGGAGGU--UCCGCGCGAUGa -3'
miRNA:   3'- ugcuCGUCCUUCGccAGGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 29821 0.68 0.810972
Target:  5'- gACGGGCGGG--GC-GUCuCACGCAGCc -3'
miRNA:   3'- -UGCUCGUCCuuCGcCAG-GUGCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.