Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5743 | 5' | -56.3 | NC_001806.1 | + | 33645 | 0.68 | 0.810972 |
Target: 5'- cACGGGCGGGggGgGGgugUCGCGgGcCGu -3' miRNA: 3'- -UGCUCGUCCuuCgCCa--GGUGCgUuGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 97140 | 0.68 | 0.802155 |
Target: 5'- cGCGGGU-GGAGGCGuUCCAcCGguACGg -3' miRNA: 3'- -UGCUCGuCCUUCGCcAGGU-GCguUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 22992 | 0.68 | 0.802155 |
Target: 5'- cGCGAGCu----GCGGUUCguGCGCGACGc -3' miRNA: 3'- -UGCUCGuccuuCGCCAGG--UGCGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 23951 | 0.68 | 0.802155 |
Target: 5'- cUGGGgGGGccgccgGAGUGGUCCgccgaGCGCGGCGg -3' miRNA: 3'- uGCUCgUCC------UUCGCCAGG-----UGCGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 21527 | 0.68 | 0.793186 |
Target: 5'- cGCGAaCGGGAGGCcccgCUACGCGGCGc -3' miRNA: 3'- -UGCUcGUCCUUCGcca-GGUGCGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 4672 | 0.68 | 0.787734 |
Target: 5'- gGCGGGCGcGGcgacAGGCGGUCCgugggguccggauacGCGCcGCGu -3' miRNA: 3'- -UGCUCGU-CC----UUCGCCAGG---------------UGCGuUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 11775 | 0.68 | 0.784072 |
Target: 5'- -gGAGCGGGGauGGUGGUCgAgGgAGCGg -3' miRNA: 3'- ugCUCGUCCU--UCGCCAGgUgCgUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 2990 | 0.68 | 0.784072 |
Target: 5'- cGCGGGgAGGcGGCGGcggCCGC-CAGCGc -3' miRNA: 3'- -UGCUCgUCCuUCGCCa--GGUGcGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 38819 | 0.69 | 0.774822 |
Target: 5'- cCGGGCGGGGguggauacgcuGGCuggguuGGUCUugGUAACGg -3' miRNA: 3'- uGCUCGUCCU-----------UCG------CCAGGugCGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 6092 | 0.69 | 0.762609 |
Target: 5'- gGCG-GCGGGggGCGGgucucUCCgGCGCAcauaaaggcccggcGCGa -3' miRNA: 3'- -UGCuCGUCCuuCGCC-----AGG-UGCGU--------------UGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 21762 | 0.69 | 0.755951 |
Target: 5'- cGCGGGCcgucGGgcGgGGUCCgucgaGCGCGGCGc -3' miRNA: 3'- -UGCUCGu---CCuuCgCCAGG-----UGCGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 5660 | 0.69 | 0.755951 |
Target: 5'- cAUGGGCGGGgcGCgagggcgggugGGUCCGCGCccCGc -3' miRNA: 3'- -UGCUCGUCCuuCG-----------CCAGGUGCGuuGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 136976 | 0.69 | 0.746348 |
Target: 5'- cGCGAGCGuGGu-GCGGUCaugGCGGCGg -3' miRNA: 3'- -UGCUCGU-CCuuCGCCAGgugCGUUGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 57155 | 0.69 | 0.746348 |
Target: 5'- cGCGAG-GGGAGGgGGUgCGCGCAuaaagcccagcACGg -3' miRNA: 3'- -UGCUCgUCCUUCgCCAgGUGCGU-----------UGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 146832 | 0.69 | 0.736645 |
Target: 5'- -gGAGCAGGGugcGGCGGcUCCAgccggggacCGCGGCc -3' miRNA: 3'- ugCUCGUCCU---UCGCC-AGGU---------GCGUUGc -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 127767 | 0.69 | 0.726851 |
Target: 5'- uGCGGGCcuGuGGCGGccgucucgcgaUCCGCGCAugGa -3' miRNA: 3'- -UGCUCGucCuUCGCC-----------AGGUGCGUugC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 24899 | 0.7 | 0.716977 |
Target: 5'- -gGGGC-GGAGGCGGgcuuggCCACGCccccGCGg -3' miRNA: 3'- ugCUCGuCCUUCGCCa-----GGUGCGu---UGC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 45283 | 0.7 | 0.70703 |
Target: 5'- aGCG-GCGGGAGacGCGGgcCCGCGCGGgGa -3' miRNA: 3'- -UGCuCGUCCUU--CGCCa-GGUGCGUUgC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 9235 | 0.7 | 0.706032 |
Target: 5'- gGCGGGCGGucaugucGggGgGGUCCGCGUucguCGg -3' miRNA: 3'- -UGCUCGUC-------CuuCgCCAGGUGCGuu--GC- -5' |
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5743 | 5' | -56.3 | NC_001806.1 | + | 77383 | 0.7 | 0.69702 |
Target: 5'- gACGGGCGcGGgcGCGGcggCCGCGCccGCGc -3' miRNA: 3'- -UGCUCGU-CCuuCGCCa--GGUGCGu-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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