miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 5' -56.3 NC_001806.1 + 21191 0.67 0.844545
Target:  5'- gACGAGCGGGggGCccucggguGGggCGCGgaGACGg -3'
miRNA:   3'- -UGCUCGUCCuuCG--------CCagGUGCg-UUGC- -5'
5743 5' -56.3 NC_001806.1 + 21527 0.68 0.793186
Target:  5'- cGCGAaCGGGAGGCcccgCUACGCGGCGc -3'
miRNA:   3'- -UGCUcGUCCUUCGcca-GGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 21762 0.69 0.755951
Target:  5'- cGCGGGCcgucGGgcGgGGUCCgucgaGCGCGGCGc -3'
miRNA:   3'- -UGCUCGu---CCuuCgCCAGG-----UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 22992 0.68 0.802155
Target:  5'- cGCGAGCu----GCGGUUCguGCGCGACGc -3'
miRNA:   3'- -UGCUCGuccuuCGCCAGG--UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 23951 0.68 0.802155
Target:  5'- cUGGGgGGGccgccgGAGUGGUCCgccgaGCGCGGCGg -3'
miRNA:   3'- uGCUCgUCC------UUCGCCAGG-----UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 24673 0.67 0.867738
Target:  5'- -gGGGCGcGAGGCGGUgCGCGcCGGCc -3'
miRNA:   3'- ugCUCGUcCUUCGCCAgGUGC-GUUGc -5'
5743 5' -56.3 NC_001806.1 + 24899 0.7 0.716977
Target:  5'- -gGGGC-GGAGGCGGgcuuggCCACGCccccGCGg -3'
miRNA:   3'- ugCUCGuCCUUCGCCa-----GGUGCGu---UGC- -5'
5743 5' -56.3 NC_001806.1 + 25894 0.78 0.296197
Target:  5'- cGCGcaaaaaaGGCGGGcGGCGGUCCGgGCGGCGu -3'
miRNA:   3'- -UGC-------UCGUCCuUCGCCAGGUgCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 25939 0.75 0.422517
Target:  5'- gGCGGGCGuGGggGCGGggCCGCGgGAgCGg -3'
miRNA:   3'- -UGCUCGU-CCuuCGCCa-GGUGCgUU-GC- -5'
5743 5' -56.3 NC_001806.1 + 26827 0.72 0.56504
Target:  5'- cGCGGGCGGGGAGgGGgcgCCGgagcccccCGCGACc -3'
miRNA:   3'- -UGCUCGUCCUUCgCCa--GGU--------GCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 27262 0.72 0.595363
Target:  5'- -gGGGCGGGAcuggccaaucGGCGGccgCCAgCGCGGCGg -3'
miRNA:   3'- ugCUCGUCCU----------UCGCCa--GGU-GCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 29821 0.68 0.810972
Target:  5'- gACGGGCGGG--GC-GUCuCACGCAGCc -3'
miRNA:   3'- -UGCUCGUCCuuCGcCAG-GUGCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 30503 0.71 0.645316
Target:  5'- uCGAGCAGGAGGCGGcggugcgUCCgaggaagagGCGCGGg- -3'
miRNA:   3'- uGCUCGUCCUUCGCC-------AGG---------UGCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 31310 0.67 0.852477
Target:  5'- -gGAGCAGGggGCGucgaCC-CGgGACGa -3'
miRNA:   3'- ugCUCGUCCuuCGCca--GGuGCgUUGC- -5'
5743 5' -56.3 NC_001806.1 + 33645 0.68 0.810972
Target:  5'- cACGGGCGGGggGgGGgugUCGCGgGcCGu -3'
miRNA:   3'- -UGCUCGUCCuuCgCCa--GGUGCgUuGC- -5'
5743 5' -56.3 NC_001806.1 + 34307 0.7 0.686956
Target:  5'- aGCG-GCGGGggGCGG--CGCGCcgGACGg -3'
miRNA:   3'- -UGCuCGUCCuuCGCCagGUGCG--UUGC- -5'
5743 5' -56.3 NC_001806.1 + 38819 0.69 0.774822
Target:  5'- cCGGGCGGGGguggauacgcuGGCuggguuGGUCUugGUAACGg -3'
miRNA:   3'- uGCUCGUCCU-----------UCG------CCAGGugCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 45283 0.7 0.70703
Target:  5'- aGCG-GCGGGAGacGCGGgcCCGCGCGGgGa -3'
miRNA:   3'- -UGCuCGUCCUU--CGCCa-GGUGCGUUgC- -5'
5743 5' -56.3 NC_001806.1 + 45857 0.68 0.810972
Target:  5'- ---cGCGGGAGGU--UCCGCGCGAUGa -3'
miRNA:   3'- ugcuCGUCCUUCGccAGGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 48304 0.66 0.902121
Target:  5'- -aGAgGCGGGGcuGGCGGcUCCGCGCc--- -3'
miRNA:   3'- ugCU-CGUCCU--UCGCC-AGGUGCGuugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.